PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018411.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 497aa    MW: 55223 Da    PI: 5.6121
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018411.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.22.7e-12321366454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Pbr018411.1 321 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEL 366
                  799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-4825220IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.015317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-18318380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.78E-14320370No hitNo description
PfamPF000107.3E-10321366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-17321381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-16323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEELIISPSS SSSLVSLPQE NHPSLQQRLQ FILQSQPDWW SYAIFWQTSN DRQVDNGCLF  60
LTWGDGHFQG PKDASPNNHH HNPYGVLSER RKILKGIQSL INDTNNPDNH HQDLILDNMG  120
LNADVTDVEW FYVTSLARSF SVGESISTNV PGKAFSSGSL VWLTGSHELQ FYNCERAKEA  180
QMHGIQTLVC IPTPTGVLEL GSSDLIRENG NLVQQTESLF GADVVWGQPD PGTRSPIDLI  240
NRNFSFADIG IIAGVEEEDD KKEVALDITA MKKKCGRACP GLLQLSNLNS LNPEHSDSEF  300
PKRTPKKRGR KPGLGRDTPL NHVEAERQRR EKLNHRFYAL RAVVPNVSRM DKASLLSDAV  360
SYINELKSKV DELESQVQRE SKKVKVETGD NLDNQSTTTS VEQTRPPNSS ASGSTGLEME  420
VKIVGSDAMI RVQSANVNYP SARLMAALRD LEFEIHHASL SCMNELMLQD VVVKVPDNMR  480
SEESIKAALL KILDQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-35182202192Transcription factor MYC3
4rqw_B1e-35182202192Transcription factor MYC3
4rs9_A1e-35182202192Transcription factor MYC3
4yz6_A1e-35182202192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018411.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375455.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A498KIX20.0A0A498KIX2_MALDO; Uncharacterized protein
STRINGXP_009375455.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-68NACL-inducible gene 1