PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018403.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 299aa    MW: 34290.2 Da    PI: 9.8509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018403.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-193689356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +  +f++eq++ Le+ Fe+++ +  +++ +LAk+lgL+ +qV +WFqN+Ra++k
  Pbr018403.1 36 NNKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPKQVAIWFQNKRARWK 89
                 5568*************************************************9 PP
2HD-ZIP_I/II117.67.2e-3836122288
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  + +r+s+eq+++LE+ Fe+e++Lep++K++la+eLglqp+qva+WFqn+RAR+k+kqlE+dy++L+++y++l+++ e+L+ke+++L 
  Pbr018403.1  36 NNKRFSDEQIRSLESIFESESRLEPRKKMQLAKELGLQPKQVAIWFQNKRARWKSKQLERDYSKLRANYNNLASKFEALKKEKQALV 122
                  579*********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.84E-191493IPR009057Homeodomain-like
PROSITE profilePS5007117.7833191IPR001356Homeobox domain
SMARTSM003898.7E-163495IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-193798IPR009057Homeodomain-like
PfamPF000462.6E-163789IPR001356Homeobox domain
CDDcd000865.52E-154092No hitNo description
PRINTSPR000311.1E-56271IPR000047Helix-turn-helix motif
PROSITE patternPS0002706689IPR017970Homeobox, conserved site
PRINTSPR000311.1E-57187IPR000047Helix-turn-helix motif
PfamPF021834.2E-1391122IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLDKIEYSSP SAEDHETFSC MSPLGAATTR RKNNKNNKRF SDEQIRSLES IFESESRLEP  60
RKKMQLAKEL GLQPKQVAIW FQNKRARWKS KQLERDYSKL RANYNNLASK FEALKKEKQA  120
LVVQSDAITT DSKARRSNER PLQWLQWSSE RPQKQHPEAH SVSGSLHSRT LIFFLGLSVS  180
IFILILVRNA LFFVFYLLLS ALVATFVVWN VRHWATKRAV FWFLNSVPES DLRLGQHGQL  240
ECNVDIASCG SLSLESSYAK ATGCIYASTL LYEYRGLTLQ PGTVERSCFH WHLAYCEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018403.1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.28e-42homeobox 7