PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018111.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 495aa MW: 53713.9 Da PI: 6.4063 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lv++vk++G g+W+++ + g+ R++k+c++rw ++l Pbr018111.1 24 KGPWTGAEDAILVEYVKKHGEGNWNAVQKNSGLARCGKSCRLRWANHL 71 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.4e-15 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+ ++eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ Pbr018111.1 77 KGSLSPEEERLIIELHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 120 57789*****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.096 | 19 | 71 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 19 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-29 | 21 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-14 | 23 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 24 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-11 | 26 | 71 | No hit | No description |
PROSITE profile | PS51294 | 25.359 | 72 | 126 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 75 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 77 | 120 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.17E-11 | 81 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 495 aa Download sequence Send to blast |
MDGVHKTGGG SHHHHHHHQR GLKKGPWTGA EDAILVEYVK KHGEGNWNAV QKNSGLARCG 60 KSCRLRWANH LRPNLKKGSL SPEEERLIIE LHAKFGNKWA RMASQLPGRT DNEIKNYWNT 120 RMKRRQKAGL PVYPHDLQQE AAAAAFHHQH QLRHSSSSPA CSFSSLFSSS HPRKPNSFSP 180 SQLSLYDHIT STFSSTSDRQ NPNNNYFLQN HHHNSSSLYS NPMTQFHGNG GFAMPLSPVS 240 PFGSSALFNQ SNIPNQTLIG QYNSHGGFGG YNNLSLSSMI MGPATYDPTP LVQGSNPELP 300 SNQTPLSING GSEGQMGGSG YTANEDHYEI APVPSQGNSG LLDDVLVEAQ NISNKKAKSG 360 DSCSSGWSGQ EKGLMVEEEE EEEESAEEGA EDTVSTLKNS GENSAENQRG GSSSLSSIGM 420 IQNEDPLEEM DDDLLSLLNF PSTMPVVSES WYAQGCTSNR ALMRSGVSTS DNVSLEIAKC 480 TVDAIGQDQH CGSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-30 | 22 | 125 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018111.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009353373.1 | 0.0 | PREDICTED: myb-like protein A | ||||
TrEMBL | A0A498J9A3 | 0.0 | A0A498J9A3_MALDO; Uncharacterized protein | ||||
STRING | XP_009353373.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 2e-68 | myb domain protein 101 |