PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018089.3
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 717aa    MW: 77981.8 Da    PI: 5.2423
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018089.3genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2081136156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Pbr018089.3  81 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 136
                  688999***********************************************999 PP
2START219.31.2e-682714921206
                  HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                  ela +a++elv++a+ +ep+W++s     + +n+de++++f+++ +     +++ea+r+s+vv+m++ +lve+l+d++ qW++ +     +a tlev+
  Pbr018089.3 271 ELAVAAMEELVRMAQMGEPLWMTSLdgsaTVLNEDEYIRTFPRGVGpkqngFKTEASRESAVVIMNHINLVEILMDVN-QWSTVFSgivsRALTLEVL 367
                  57899********************999999**********9976699999***************************.******************* PP

                  CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
        START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                  s+g      galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ +++p       +++ pSg+li++++ng+skvtwveh+++++r 
  Pbr018089.3 368 STGvagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHADGTWAVVDVSLDNLRPNPA---PRSCQRMPSGCLIQEMPNGYSKVTWVEHAEVDERG 462
                  ***********************************************************4...455789***************************** PP

                  XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 177 phwllrslvksglaegaktwvatlqrqcek 206
                  +h+l+++lv+sg+a+gak+wvatl+rqce+
  Pbr018089.3 463 VHNLYKQLVSSGHAFGAKRWVATLDRQCER 492
                  ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2360136IPR009057Homeodomain-like
SuperFamilySSF466896.27E-2067138IPR009057Homeodomain-like
PROSITE profilePS5007116.95778138IPR001356Homeobox domain
SMARTSM003894.8E-2079142IPR001356Homeobox domain
CDDcd000862.40E-1981139No hitNo description
PfamPF000464.0E-1881136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PROSITE profilePS5084843.887262495IPR002913START domain
SuperFamilySSF559612.6E-35264494No hitNo description
CDDcd088753.89E-131266491No hitNo description
SMARTSM002346.0E-65271492IPR002913START domain
PfamPF018521.5E-58272492IPR002913START domain
Gene3DG3DSA:3.30.530.204.4E-5370474IPR023393START-like domain
SuperFamilySSF559617.69E-20510708No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MPSMIGSNGN INGFASSSGL TLGQPNMMEA GHLHPLDMAT NTSESDIARF RDDDFDSATK  60
SGSDNPEGGS GDDQENPRPK KKRYHRHTQH QIQEMEAFFK ECPHPDDKQR KELSRELGLE  120
PLQVKFWFQN KRTQMKTQHE RHENTQLRNE NEKLRADNMR YREALGNASC PNCGGPTALG  180
EMSFDEHHLR LENARLREEI DRISAIAAKY VGKPLGNYPL MSSPVPSRGP LDLGVGSFGG  240
QPGMGGEIYG AGDLLRSISA PSEADKPMII ELAVAAMEEL VRMAQMGEPL WMTSLDGSAT  300
VLNEDEYIRT FPRGVGPKQN GFKTEASRES AVVIMNHINL VEILMDVNQW STVFSGIVSR  360
ALTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRESYY VRYCKQHADG TWAVVDVSLD  420
NLRPNPAPRS CQRMPSGCLI QEMPNGYSKV TWVEHAEVDE RGVHNLYKQL VSSGHAFGAK  480
RWVATLDRQC ERLASAMASN IPTGDVGECH TWTTLSGTGA DDVRVMTRKS VDDPGRPPGI  540
VLSAATSFWL PVPPKRVFEF LRDENSRSEW DILSNGGIVQ EMAHIANGRD TGNCVSLLRS  600
ANSSQSNMLI LQESFSDPTA SFVIYAPVDI VSMNVVLNGS DPDYVALLPS GFAILPDGAG  660
IGDSGSGGGS LLTVAFQILV DSVPTAKLSL GSVATVNNLI ACTVERIKAA LSCDNV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018089.3
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018502305.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A498J5M20.0A0A498J5M2_MALDO; Uncharacterized protein
STRINGXP_009353264.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2