PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr017204.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 419aa MW: 47277.8 Da PI: 5.9816

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr017204.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142	3.5e-44	100	225	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppG+rF+P d el+v+yL kkv +++l+ + i ev++y+++P+ L +k+++ ++wyfF++rd+ky++g+r++ra+ +gyWkatg dkev+s +g++ Pbr017204.1 100 PPGYRFNPFDGELIVHYLMKKVLDQPLPP-NRIFEVNLYRYNPEVLAEKYEKYGDKWYFFTPRDRKYRNGSRPKRAAGDGYWKATGADKEVKSFDGAV 196 9***********************999.77**********988888889*************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg +k Lvfy+g+ pkg kt+W+mhe+++ Pbr017204.1 197 VGSRKALVFYRGKPPKGDKTNWIMHEFKV 225 *************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-52	97	252	IPR003441	NAC domain
PROSITE profile	PS51005	52.419	99	252	IPR003441	NAC domain
Pfam	PF02365	4.8E-23	100	224	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MSSPSESPTM EPVEQSHPDH KASVTIITQQ VASYSLSPNK QSPAQGDQGL FTPTSETGVS 60 LTTNVSAAAG GTYHELSEDE ANSLHNNLIR DQDDFFNSFP PGYRFNPFDG ELIVHYLMKK 120 VLDQPLPPNR IFEVNLYRYN PEVLAEKYEK YGDKWYFFTP RDRKYRNGSR PKRAAGDGYW 180 KATGADKEVK SFDGAVVGSR KALVFYRGKP PKGDKTNWIM HEFKVKDSPV RSRRGENDMR 240 LDNWVLCRIY KKDGNNGKRC ESRNHAEIHS PFPHRINDES MEIEMSGDIV DPLPEYDPAL 300 EYDHKYSYIP YPLMASQPNI SGGLPVNMIS NNRIQSVEAA SVNAGSCYAN MGYSQPICVR 360 PPLMSSESVL GPYRYIDEST ILQDDMIFGM KGFEHSLYST NNYAGQFSAL DNVFPYTE*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MSSPSESPTM EPVEQSHPDH KASVTIITQQ VASYSLSPNK QSPAQGDQGL FTPTSETGVS  60
LTTNVSAAAG GTYHELSEDE ANSLHNNLIR DQDDFFNSFP PGYRFNPFDG ELIVHYLMKK  120
VLDQPLPPNR IFEVNLYRYN PEVLAEKYEK YGDKWYFFTP RDRKYRNGSR PKRAAGDGYW  180
KATGADKEVK SFDGAVVGSR KALVFYRGKP PKGDKTNWIM HEFKVKDSPV RSRRGENDMR  240
LDNWVLCRIY KKDGNNGKRC ESRNHAEIHS PFPHRINDES MEIEMSGDIV DPLPEYDPAL  300
EYDHKYSYIP YPLMASQPNI SGGLPVNMIS NNRIQSVEAA SVNAGSCYAN MGYSQPICVR  360
PPLMSSESVL GPYRYIDEST ILQDDMIFGM KGFEHSLYST NNYAGQFSAL DNVFPYTE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-49	98	258	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-49	98	258	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-49	98	258	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-49	98	258	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-49	98	258	19	174	NAC domain-containing protein 19
3swm_B	2e-49	98	258	19	174	NAC domain-containing protein 19
3swm_C	2e-49	98	258	19	174	NAC domain-containing protein 19
3swm_D	2e-49	98	258	19	174	NAC domain-containing protein 19
3swp_A	2e-49	98	258	19	174	NAC domain-containing protein 19
3swp_B	2e-49	98	258	19	174	NAC domain-containing protein 19
3swp_C	2e-49	98	258	19	174	NAC domain-containing protein 19
3swp_D	2e-49	98	258	19	174	NAC domain-containing protein 19
4dul_A	2e-49	98	258	16	171	NAC domain-containing protein 19
4dul_B	2e-49	98	258	16	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr017204.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009374955.2	0.0	PREDICTED: NAC domain-containing protein 68-like
TrEMBL	A0A498KCL4	0.0	A0A498KCL4_MALDO; Uncharacterized protein
STRING	XP_009374955.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10112	16	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	6e-58	NAC domain containing protein 32