PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016997.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 63aa MW: 6881.75 Da PI: 4.7224

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016997.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	35.8	1.1e-11	1	36	339	374
GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ll ++ +gyrvee++g+l+lgW++rpL+++S W+ Pbr016997.1 1 MLLTLFSAEGYRVEENQGCLTLGWHNRPLIAASGWQ 36 6999*******************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	3.7E-9	1	36	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MLLTLFSAEG YRVEENQGCL TLGWHNRPLI AASGWQVMSM PEATTNQEAV GIINQNNNPN 60 HI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016997.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ007887	3e-70	DQ007887.1 Malus x domestica DELLA protein (L3a) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315645.1	4e-30	DELLA protein GAI-like
TrEMBL	A0A498HSU0	4e-30	A0A498HSU0_MALDO; Uncharacterized protein
STRING	XP_008337344.1	3e-30	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-13	GRAS family protein