PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016935.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 374aa MW: 41919.4 Da PI: 9.1831

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016935.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.1	4.1e-54	8	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 lppGfrFhPtdeel+ +yL kkv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ + Pbr016935.1 8 LPPGFRFHPTDEELILHYLIKKVASTPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPsgG 104 79**************************.89***********988899***********************************99888 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kk Lvfykgr pkg kt+W+mheyrl Pbr016935.1 105 RQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136 889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-64	6	173	IPR003441	NAC domain
PROSITE profile	PS51005	62.069	8	173	IPR003441	NAC domain
Pfam	PF02365	3.8E-27	9	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASTPLPVSII AEVDIYKFDP WELPAKAAFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAMKLNDLSM RLDDWVLCRI YKKSNVVTSA 180 AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PILDHNMMST STTSSLKPQK SCSFSNLLDA 240 MDCSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPLPLFN TNISSNRSHL 300 FQTLPQYNGL NLPSSAPSTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF SNTANSFLNQ 360 QLLLSNPRFH FQE*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MKNPESRLPP GFRFHPTDEE LILHYLIKKV ASTPLPVSII AEVDIYKFDP WELPAKAAFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVA PSGGRQNVGV KKALVFYKGR  120
PPKGIKTNWI MHEYRLPESP NNYTTTTNHH RAMKLNDLSM RLDDWVLCRI YKKSNVVTSA  180
AALPNDQDQD VQGEEDFLHD ILLPSLKSPF PILDHNMMST STTSSLKPQK SCSFSNLLDA  240
MDCSLLTSIL ADGQYYIPTG TGLQSTTPNK FSYSCTGSTS TGLDPLPLFN TNISSNRSHL  300
FQTLPQYNGL NLPSSAPSTE NRLKRQHSIT DDRGMLLYPS KKDVNSNCSF SNTANSFLNQ  360
QLLLSNPRFH FQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-71	5	175	12	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016935.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF198115	0.0	KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353167.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	4e-99	NAC47_ARATH; NAC transcription factor 47
TrEMBL	S5RDR3	0.0	S5RDR3_MALHU; NAC domain protein
STRING	XP_009353167.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6621	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	1e-101	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]