PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016928.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 448aa    MW: 49704.7 Da    PI: 7.9097
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016928.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1071.1e-3363117155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kprl+Wtp+LHerF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Pbr016928.2  63 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 117
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.01460120IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-3161118IPR009057Homeodomain-like
SuperFamilySSF466899.85E-1762118IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-2363118IPR006447Myb domain, plants
PfamPF002495.4E-1065116IPR001005SANT/Myb domain
PfamPF143798.7E-24170216IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MMYHHQQQHQ HQHQHQGKKI IHSASSSRMS MPNIPSERHL FLQQGDQNSP AGDSGLVLST  60
DAKPRLKWTP DLHERFIEAV NQLGGADKAT PKTVMKLMGI PGLTLYHLKS HLQKYRLSKN  120
LHGGHVTSSL TKIGPVPVSV AGERLISEAN GSQMSTTSTG IAPQSNKGLH ITETLEMQIE  180
VQRRLHEQLE VQRHLQLRIE SQGKYLQSVL EKAQETLGRQ NLGTVGLEAA QVQLSELVSK  240
VSTQCLNSSF TDLKELQGLC PQQTQTNQQP TDCSMDSCLT FCEGSKKDQD QIHSSGVPLR  300
PNYNGRVTAV LEQKDTERAQ PPMLQNTSQL NWCEDMKENN MFISSISKDA EKRMFPAAET  360
RSSDLSMSIG LQGERWNLDS KGRDSDGSFL ERTNSSRADS AKVKGAKVSQ GYRSVPYFAA  420
KLDLNAHDDN DASSSCRQFD LNGFSWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-2163119157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-2163119157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-2163119157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-2163119157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-2162119158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016928.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353160.10.0PREDICTED: myb-related protein 2-like
SwissprotQ9SQQ91e-135PHL9_ARATH; Myb-related protein 2
TrEMBLA0A498I2G10.0A0A498I2G1_MALDO; Uncharacterized protein
STRINGXP_009353160.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-128G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]