PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016876.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 247aa    MW: 26415.5 Da    PI: 7.4619
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016876.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.84.4e-39531541101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPvyG+v+++l+lqqq+++l+aela++
  Pbr016876.1  53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHDAVVTITYEAQARLSDPVYGCVSTVLALQQQVASLQAELATV 150
                  7***********************9989********************************************************************** PP

       DUF260  98 keel 101
                  +++l
  Pbr016876.1 151 QTQL 154
                  9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.69652154IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-3853151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MADQPEQGDH GTSEGRRKGT SSRGGGKRAS MEAAVRTTTT TSNVVGSGSG AAPCGACKFL  60
RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRHDA VVTITYEAQA  120
RLSDPVYGCV STVLALQQQV ASLQAELATV QTQLINSRFA FANALQITSQ QQQQNMALML  180
QPAYSNNTST STNLINMSSL TSNLDIDAAP SSQSFMEPLQ LSRLSQDDED DEEESRVPLL  240
FANNRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-38471606115LOB family transfactor Ramosa2.1
5ly0_B2e-38471606115LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016876.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009353184.10.0PREDICTED: LOB domain-containing protein 20-like
SwissprotQ9SRV31e-80LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A498I2L31e-129A0A498I2L3_MALDO; Uncharacterized protein
STRINGXP_009353184.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-55LOB domain-containing protein 20