![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr016851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 407aa MW: 44425.3 Da PI: 9.252 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 120 | 165 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W+ Ia+++ gR++k+c++rw++ Pbr016851.1 120 RGHWRPAEDSKLKELVGQYGPQNWNIIAEKLD-GRSGKSCRLRWFNQ 165 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.6e-17 | 173 | 215 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ Pbr016851.1 173 RAFSEEEEERLLVAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215 689******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.477 | 115 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.92E-27 | 119 | 213 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-13 | 119 | 168 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 120 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-25 | 121 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.68E-12 | 123 | 164 | No hit | No description |
PROSITE profile | PS51294 | 25.611 | 167 | 221 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 171 | 219 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 173 | 214 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-20 | 174 | 219 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.20E-11 | 174 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 407 aa Download sequence Send to blast |
MGFQHLRSDC DGFTRYKDLN FLPPPPVSNQ LSLSNTFGRS STSAMGLGPF SPSLSQQTNK 60 SWSFQALENG GPKNISDHGV LFGVDLKTPV PLNLNLVGEE DDDEDRSPAG GRTSAKSCAR 120 GHWRPAEDSK LKELVGQYGP QNWNIIAEKL DGRSGKSCRL RWFNQLDPRI NKRAFSEEEE 180 ERLLVAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARR HREQSNVFKR RKPSSPPPPS 240 PPAPPPHMVA NFPKNPSTST ESTISISTIN DDSTQSASTC TDLSLTPSNK PPPTFFTKFH 300 HFHHQQNFGS HIGTSSSDGG FKKMIGSNGN GFCRSTGPAR GVGAGAAAMK GVDTSGHQSD 360 SNSDISGDDS VTTTRTNLSL SGENQNLHHE KITTIHFIDF LGVGTP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-32 | 120 | 220 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-32 | 120 | 220 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr016851.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009353183.1 | 0.0 | PREDICTED: myb-related protein Zm38-like | ||||
TrEMBL | A0A498HZD5 | 0.0 | A0A498HZD5_MALDO; Uncharacterized protein | ||||
STRING | XP_009353183.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-71 | myb domain protein 105 |