PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr016746.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 579aa MW: 63639.8 Da PI: 4.4079

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016746.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	113.4	1.3e-35	7	88	36	118
CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gs++L+++k+ ++fr+DGy+wkk k g+t +E hekLKv+g ++l+cyYah+ee+ +fqrr+yw+Lee+l+++vlvhy++vk Pbr016746.1 7 GGSIFLFDKKVEKHFRNDGYKWKKAKVGRT-KESHEKLKVEGLDTLHCYYAHGEEDGNFQRRIYWMLEENLSHMVLVHYRDVK 88 69************************97.9**********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	42.037	1	93	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.2E-27	1	88	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-29	7	87	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MAESNWGGSI FLFDKKVEKH FRNDGYKWKK AKVGRTKESH EKLKVEGLDT LHCYYAHGEE 60 DGNFQRRIYW MLEENLSHMV LVHYRDVKVM PYTVIYIFSS ISFICAGEKR KARYIEETES 120 AEGVQHSRKT DEITPNSKMD SFASSSFNPS KFQHSLATDG TNLNSAPTSE SENTESACDD 180 CRWESFFNNT VTTGFSGIDE PGLFDFEMDY FGLPRFVDTA SLYSANSSYF GDDETEHSFA 240 DEFWVPWEAS FDNHFTAGLS SWTFSRASSS VAVEPSPLGK RQREVDKEKD EEEDGNDINQ 300 VRKRPKVTCG QKSNSVGPSN DSEEATLAVG TAHTQVQQFN FAIQQGEVIA GNNPAASDVA 360 VTIDRAITDG AMNDATALSQ DDETTRLAAF HIADPTVAAT SAIGPIHLNP YTIAKVADQA 420 QPPVPQPTAT IGVDIAAATR LLLPSLAIQP WCNQDQPQMP TIGVDISAAT NKTEAPESSD 480 PALVQTRPTS NVNQDFVQDV ESQEKETEPT SFETENGKGK IMVQSDVGTE KAQDSQPTVT 540 TGIVISATTN ETVASESSNH ALMQWEPTSN ANQDFPKT*

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MAESNWGGSI FLFDKKVEKH FRNDGYKWKK AKVGRTKESH EKLKVEGLDT LHCYYAHGEE  60
DGNFQRRIYW MLEENLSHMV LVHYRDVKVM PYTVIYIFSS ISFICAGEKR KARYIEETES  120
AEGVQHSRKT DEITPNSKMD SFASSSFNPS KFQHSLATDG TNLNSAPTSE SENTESACDD  180
CRWESFFNNT VTTGFSGIDE PGLFDFEMDY FGLPRFVDTA SLYSANSSYF GDDETEHSFA  240
DEFWVPWEAS FDNHFTAGLS SWTFSRASSS VAVEPSPLGK RQREVDKEKD EEEDGNDINQ  300
VRKRPKVTCG QKSNSVGPSN DSEEATLAVG TAHTQVQQFN FAIQQGEVIA GNNPAASDVA  360
VTIDRAITDG AMNDATALSQ DDETTRLAAF HIADPTVAAT SAIGPIHLNP YTIAKVADQA  420
QPPVPQPTAT IGVDIAAATR LLLPSLAIQP WCNQDQPQMP TIGVDISAAT NKTEAPESSD  480
PALVQTRPTS NVNQDFVQDV ESQEKETEPT SFETENGKGK IMVQSDVGTE KAQDSQPTVT  540
TGIVISATTN ETVASESSNH ALMQWEPTSN ANQDFPKT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016746.1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14241	18	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	6e-32	signal responsive 1