PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr016603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 276aa MW: 31482.5 Da PI: 7.8882 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 17 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W++++r g++R +k+c++rw +yl Pbr016603.1 17 KGPWTPEEDKLLNEYVTLHGDGRWSSVPRSTGLNRNGKSCRLRWVNYL 64 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.1e-16 | 71 | 114 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ Pbr016603.1 71 GHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNFWRTH 114 667******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.968 | 12 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-30 | 14 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 16 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-16 | 17 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-23 | 18 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.20E-9 | 19 | 64 | No hit | No description |
PROSITE profile | PS51294 | 24.4 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-24 | 72 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.79E-9 | 74 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 276 aa Download sequence Send to blast |
MVAMMGWGGV GEQGWRKGPW TPEEDKLLNE YVTLHGDGRW SSVPRSTGLN RNGKSCRLRW 60 VNYLRPGLKK GHITPQEEGI IIELHALWGN KWSTIARYLP GRTDNEIKNF WRTHFKKKEK 120 CTQKQEKRKA EILKAKQQQL EEDQNMKARA TTPHHHWEAC SQGIISNMNN IDIHETQATW 180 QENMEEDKYC LPKLMHQASV EFWSDLLGEE GFYKLWNLDD VSGRMDLQQH TSLSQCNKAA 240 MQINNQGITA ALSSGGESCN ISLQNGSETS SPALF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 17 | 118 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr016603.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373818.2 | 0.0 | PREDICTED: myb-related protein 340 | ||||
TrEMBL | A0A498HFR2 | 1e-163 | A0A498HFR2_MALDO; Uncharacterized protein | ||||
STRING | XP_009373818.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30210.1 | 6e-64 | myb domain protein 121 |