PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr016519.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 1027aa MW: 110064 Da PI: 4.2686

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr016519.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00089	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ rH r H Pbr016519.1 21 HVCSKCGWPFPNPHPSARHRRAH 43 79******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MDAQDLVRSH STGHESHGGV HVCSKCGWPF PNPHPSARHR RAHKRICGTI DGYKLVGLQE 60 NTQSDDEHSD DDRKTPSSKV LERSNNEKGS GLIGGESVRS EDAVFSDAVA EFLDSGSGAG 120 TGEGLEDVLK SATSVERVAK NDLNAIQSPN DGEINENTTN QLGYAPESQG SMSITSIDSM 180 KSSESAVQDD RNGSEDDVHP ITDVSEDSKK THATDSVIES SLTSISQEVQ VKEIEASDQD 240 RNLPYGLVAP NEVSSETAEG AFKLERSVEV TSDSLRDIEV VPSEKERIHV FDLDIPQVGL 300 SPDVESVEHA QASVNTAENK VDTTDEMHCF SSGGLTESSN SKGEGSANVH VLSVPDDLPV 360 VDNAAAMLEG FKTYKEEKLD QPTFLDSWEQ FNDEENGVKN PVSNDNSQIF QSSNLSGGTV 420 ASSEMHDLEA SHELDGGSSK PMVKEVPSEE ASVSQNEIKT TENQGSDEKS TPADIVMPQV 480 AKNLVGFPEG QVTYDNYKSL QVNFPESDTN VASDAKSLSS TGINQTTHSV GLDDNEKDEK 540 CDLSADHSSK GPVEGNFIDD GDHETEKYAI TGDEYIEVSM EKIVAENPIT SLENTSCLSE 600 LQVNPTDIHN GDDSGDHDKG ETEKSAISGN KSRGGSIEEN LLAKPKLNVD SSSNSSRADL 660 NVVSDTKKSV MESEIDCNDK VQLEVGGSTA AGSEHGPNVE SSQKSLMDCG TKEVGLSSLD 720 TESSVPNLSS LATESSVPSF TVAEDNCSGE LLGVSSGLTS QSLQEESDKL VEQQTNSSAL 780 DVVDSNSQTD SLEGNWGSVS VYSIQSEAQA VLDAEAVPLT DPQASLEKKA KLASERQYSD 840 KSDTFEAPSF MTLVEPGGVD NQKATGAEIK TAQNPEQPKP APLQAGWFPS ITHVVNESPG 900 RRKNEEIIAK VTNWSTAKQH TPLKNLLGEA YLENKAKSPN QKESQAPALQ KDDKAVTGKD 960 NGRLTTTVNS ILAPESPTGQ ASRKDNAKEW NSPARYPPEI KIEKQKAKGR PYWAQFLCCS 1020 SAHQHP*

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MDAQDLVRSH STGHESHGGV HVCSKCGWPF PNPHPSARHR RAHKRICGTI DGYKLVGLQE  60
NTQSDDEHSD DDRKTPSSKV LERSNNEKGS GLIGGESVRS EDAVFSDAVA EFLDSGSGAG  120
TGEGLEDVLK SATSVERVAK NDLNAIQSPN DGEINENTTN QLGYAPESQG SMSITSIDSM  180
KSSESAVQDD RNGSEDDVHP ITDVSEDSKK THATDSVIES SLTSISQEVQ VKEIEASDQD  240
RNLPYGLVAP NEVSSETAEG AFKLERSVEV TSDSLRDIEV VPSEKERIHV FDLDIPQVGL  300
SPDVESVEHA QASVNTAENK VDTTDEMHCF SSGGLTESSN SKGEGSANVH VLSVPDDLPV  360
VDNAAAMLEG FKTYKEEKLD QPTFLDSWEQ FNDEENGVKN PVSNDNSQIF QSSNLSGGTV  420
ASSEMHDLEA SHELDGGSSK PMVKEVPSEE ASVSQNEIKT TENQGSDEKS TPADIVMPQV  480
AKNLVGFPEG QVTYDNYKSL QVNFPESDTN VASDAKSLSS TGINQTTHSV GLDDNEKDEK  540
CDLSADHSSK GPVEGNFIDD GDHETEKYAI TGDEYIEVSM EKIVAENPIT SLENTSCLSE  600
LQVNPTDIHN GDDSGDHDKG ETEKSAISGN KSRGGSIEEN LLAKPKLNVD SSSNSSRADL  660
NVVSDTKKSV MESEIDCNDK VQLEVGGSTA AGSEHGPNVE SSQKSLMDCG TKEVGLSSLD  720
TESSVPNLSS LATESSVPSF TVAEDNCSGE LLGVSSGLTS QSLQEESDKL VEQQTNSSAL  780
DVVDSNSQTD SLEGNWGSVS VYSIQSEAQA VLDAEAVPLT DPQASLEKKA KLASERQYSD  840
KSDTFEAPSF MTLVEPGGVD NQKATGAEIK TAQNPEQPKP APLQAGWFPS ITHVVNESPG  900
RRKNEEIIAK VTNWSTAKQH TPLKNLLGEA YLENKAKSPN QKESQAPALQ KDDKAVTGKD  960
NGRLTTTVNS ILAPESPTGQ ASRKDNAKEW NSPARYPPEI KIEKQKAKGR PYWAQFLCCS  1020
SAHQHP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr016519.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018506758.1	0.0	PREDICTED: dentin sialophosphoprotein
TrEMBL	A0A498JXI8	0.0	A0A498JXI8_MALDO; Uncharacterized protein
STRING	XP_009373596.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5051	17	19