PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016284.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 506aa    MW: 57160.4 Da    PI: 5.401
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016284.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.24.8e-1791471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratk..sgyWka 85 
                  + pG+rF P +eel+ +yL +k++g  ++  ++ + ++++y   eP+   +     +  a    ++k++yf ++  +k ++g+r +r+++   g+Wk 
  Pbr016284.1   9 MLPGYRFCPLEEELILDYLLPKANGMVVPGIDHvVFDFNLYGDqEPSAVWEnfktrR--AndlrRNKDLYFITELTTKVPRGSRISRTVAkgVGTWKG 104
                  579***********************9776554499999996549*99964244431..1445456689******************66623577*** PP

          NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    k k+++    +++++g +k + +   ++ +g+  +W+m ++ l
  Pbr016284.1 105 DDKGKKICYPagTNNVIGYRKRFHYE--NKGSGKDDRWIMLQFDL 147
                  *******999777788*****99886..788999********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-207167IPR003441NAC domain
PROSITE profilePS5100525.2149168IPR003441NAC domain
PfamPF023652.6E-1211146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEHVYDDRML PGYRFCPLEE ELILDYLLPK ANGMVVPGID HVVFDFNLYG DQEPSAVWEN  60
FKTRRANDLR RNKDLYFITE LTTKVPRGSR ISRTVAKGVG TWKGDDKGKK ICYPAGTNNV  120
IGYRKRFHYE NKGSGKDDRW IMLQFDLHQS LIHNQQEKKY VLCILRKNEE FDKKRKQLAE  180
KDEEMVGEDV DNKSARSLET HGKRQRLLPC VSELEYRQPR INMISSPPLA TGLVHAREEN  240
QGQELLVTCF NNVPSFADNE PSALQWEEAW CQQQQKFQPC IDNNNIVPAA VTLPDDFDQY  300
VGDAGYTATT QADRHYPYVS KTGFTSTTQA HDHPYVDASG FRVTTQAHDI HQYVDSTGLA  360
ASTQADRLHP YINGMGFSVS TQAHDLQQYV NSASFAPTTQ VDHLHSYVDG AGFDVTTQAH  420
DLHQYVDGTR FAATTQADHL YPYVDDTGFT ATTTQADHLH PPSNNVLGGL GDLISDNFQS  480
DYMGGEDLWI SADELLRSIP DHANL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016284.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021806109.17e-78NAC domain-containing protein 12-like
TrEMBLA0A498JPC60.0A0A498JPC6_MALDO; Uncharacterized protein
STRINGEMJ093603e-75(Prunus persica)
STRINGEMJ097723e-75(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2051435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.13e-15vascular related NAC-domain protein 7