PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr016284.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 506aa MW: 57160.4 Da PI: 5.401 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 54.2 | 4.8e-17 | 9 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratk..sgyWka 85 + pG+rF P +eel+ +yL +k++g ++ ++ + ++++y eP+ + + a ++k++yf ++ +k ++g+r +r+++ g+Wk Pbr016284.1 9 MLPGYRFCPLEEELILDYLLPKANGMVVPGIDHvVFDFNLYGDqEPSAVWEnfktrR--AndlrRNKDLYFITELTTKVPRGSRISRTVAkgVGTWKG 104 579***********************9776554499999996549*99964244431..1445456689******************66623577*** PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 k k+++ +++++g +k + + ++ +g+ +W+m ++ l Pbr016284.1 105 DDKGKKICYPagTNNVIGYRKRFHYE--NKGSGKDDRWIMLQFDL 147 *******999777788*****99886..788999********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-20 | 7 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.214 | 9 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-12 | 11 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 506 aa Download sequence Send to blast |
MEHVYDDRML PGYRFCPLEE ELILDYLLPK ANGMVVPGID HVVFDFNLYG DQEPSAVWEN 60 FKTRRANDLR RNKDLYFITE LTTKVPRGSR ISRTVAKGVG TWKGDDKGKK ICYPAGTNNV 120 IGYRKRFHYE NKGSGKDDRW IMLQFDLHQS LIHNQQEKKY VLCILRKNEE FDKKRKQLAE 180 KDEEMVGEDV DNKSARSLET HGKRQRLLPC VSELEYRQPR INMISSPPLA TGLVHAREEN 240 QGQELLVTCF NNVPSFADNE PSALQWEEAW CQQQQKFQPC IDNNNIVPAA VTLPDDFDQY 300 VGDAGYTATT QADRHYPYVS KTGFTSTTQA HDHPYVDASG FRVTTQAHDI HQYVDSTGLA 360 ASTQADRLHP YINGMGFSVS TQAHDLQQYV NSASFAPTTQ VDHLHSYVDG AGFDVTTQAH 420 DLHQYVDGTR FAATTQADHL YPYVDDTGFT ATTTQADHLH PPSNNVLGGL GDLISDNFQS 480 DYMGGEDLWI SADELLRSIP DHANL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr016284.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021806109.1 | 7e-78 | NAC domain-containing protein 12-like | ||||
TrEMBL | A0A498JPC6 | 0.0 | A0A498JPC6_MALDO; Uncharacterized protein | ||||
STRING | EMJ09360 | 3e-75 | (Prunus persica) | ||||
STRING | EMJ09772 | 3e-75 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20514 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71930.1 | 3e-15 | vascular related NAC-domain protein 7 |