PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016186.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 342aa    MW: 37984.9 Da    PI: 7.1097
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016186.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.22e-3118116199
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  aCaaC+++r++C++dC++apyf +++ ++f++vh++FG+sn++kllk+l++++ r +a++s ++eA ++ +dPv+G +g ++kl+++ e l++ l++ 
  Pbr016186.1  18 ACAACRHQRKRCEEDCAMAPYFTNKD-EDFKAVHRIFGVSNMTKLLKQLEDQNhRGAAVQSFIWEAYMWNQDPVNGPLGKYRKLERENELLRNALNEE 114
                  7********************98776.99********************877769***********************************99999887 PP

       DUF260  98 ke 99 
                  ++
  Pbr016186.1 115 QN 116
                  75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.117118IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3018114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSMGSSSSAG ELVAGRHACA ACRHQRKRCE EDCAMAPYFT NKDEDFKAVH RIFGVSNMTK  60
LLKQLEDQNH RGAAVQSFIW EAYMWNQDPV NGPLGKYRKL ERENELLRNA LNEEQNASAL  120
AASTMEEEPL ALGQENNNNS GNIADDVEGV IPIYGSSLNY GYAIQSLAID RSNNGTYTNL  180
FQGHEATEMS QGQQVLRQGR GFRHGVVLAK QEAPDQRRVV GLGSSSEQFG SVGLMSTPTF  240
QYQRPTQFEG PPNIGPHING QGRGQVVFDP SVGQEQQRAL GSVGAAQIGP NFGDFSLEAH  300
RRSTITQRHD DRYTPYHHRQ PQQQQQQQRP VNAQRQVMNQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-151911312118LOB family transfactor Ramosa2.1
5ly0_B7e-151911312118LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016186.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352961.10.0PREDICTED: LOB domain-containing protein 30-like
TrEMBLA0A498IVF30.0A0A498IVF3_MALDO; Uncharacterized protein
STRINGXP_009352961.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF147861315
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.19e-21LOB domain-containing protein 2