PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015996.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 194aa    MW: 21816 Da    PI: 8.7038
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015996.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY34.54.1e-11162184123
                  ---SS-EEEEEEE--TT-SS-EE CS
         WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                  ldDgy+WrKYGqK+vk+s +pr 
  Pbr015996.1 162 LDDGYKWRKYGQKVVKNSLHPRY 184
                  59*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-13147186IPR003657WRKY domain
SuperFamilySSF1182902.88E-10154186IPR003657WRKY domain
PROSITE profilePS5081112.84157186IPR003657WRKY domain
SMARTSM007740.0013162193IPR003657WRKY domain
PfamPF031063.6E-8163187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEGDQRGVPN YEVQISFSST PQQAIHEMGF VQFEDQHHHN QVLSFLAPSS SPVQVQQQLN  60
PNNSHHHHQP AALSTSSSAT ATATSNAATM GFSTRPSWNN NNEQVGTLDP KGVSDENGTG  120
NASDCSNSWW RSSSSEKSKM KVRRKLREPR FCFQTRSDVD VLDDGYKWRK YGQKVVKNSL  180
HPRYLFAYEF RLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146KVRRKLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015996.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373203.11e-136PREDICTED: probable WRKY transcription factor 12 isoform X1
RefseqXP_028961436.11e-136probable WRKY transcription factor 12 isoform X1
TrEMBLA0A498JE681e-132A0A498JE68_MALDO; Uncharacterized protein
STRINGXP_009373203.11e-135(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72943245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.14e-22WRKY family protein