PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015628.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 984aa    MW: 107401 Da    PI: 6.078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015628.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06537557526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   Cr+++  G C+ Gd+Ck++H+
  Pbr015628.1 537 YCRHYLN-GKCNLGDQCKYSHD 557
                  6**9999.*************7 PP
2zf-CCCH18.34.1e-06591611525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  lC++f+ +G+C +Gd+C F+H
  Pbr015628.1 591 LCHHFRDNGFCGRGDSCLFSH 611
                  8******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.638532559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6532557IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5533558IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4536557IPR000571Zinc finger, CCCH-type
SMARTSM003560.041561587IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.718561585IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.065586614IPR000571Zinc finger, CCCH-type
SMARTSM003560.18589613IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 984 aa     Download sequence    Send to blast
MEENKIETEK PSQTPIVFPP HRRRHLNSGT YRTLVRIFSH FKESQHSVSD QNVPQELNRD  60
NGNNESVQEA EKEVPENAEL VGPDDAKGRV ADECCNDNGF RERIEQIESL LSVEENEDFS  120
GLEDTIDIEN ILAIDLKDMG FFPKQMLVDE PELVVKGNRE SSVASLDHNQ NGGDKAALLT  180
NEEEHVETVT SQDSVQMVSV SHGSSLKTVE VTESLNPRES TEHKHSLSKT SALDVEPIMQ  240
LESMELQTPV SAEGAIESSI PITEVGAIKE TEIFSQNVPE AFDFSLNKDM VAEASKPTDY  300
SKNKSLLPET NSLEVVLEMP EKFKETEKPV CDITAMSSTN HMDDGDIEEG EISGDNGMDG  360
RPSDELLQDT VVLEEQKVHK GQISKDVIDR KEQLCEEVND KDFGSSSFLV DVVEDGKIGR  420
GVELRESRRT DMICRPGVVQ GQNVSDSHPL LDGGRIEMKD NRVEMGIDWS AAGNHGTASE  480
EKWDAGACNK RKRGPPNKEK KERKKAKERK KRAEKNRELG VKRLKLQPLQ KPKPVAYCRH  540
YLNGKCNLGD QCKYSHDTVP LTKSTPCGKF ARNECMKGDD CGYDHDLSKY LCHHFRDNGF  600
CGRGDSCLFS HKMPSKEESE TTACKLELKP PMVQSNSRSQ QVNIGGASQQ NVHALGFSTG  660
IHSHNNTKQN VTENVLKKPE LATTGISFPS VEKSSLVHSS MSKQGGVTPN RNMGTKAGSQ  720
IDQSPFSSVQ NSNEILKRTP VTTPKGINFL SFAKASPDVA RGKSQVSHQT SPGVSETVQN  780
SNGMLKSDKT AASLGTSFNP FGKSSVASPT GGQNLNAMLQ VNLPAASQGT HFNPFGNSSL  840
AGSGRDQNFK GIQPAASQGT SFNPFRKSLV TGSNPFEKSS VSSSRTADPV SLTSCWGNGS  900
NRDSRGQNTA DKPQNSSAVS LRLPPSPITS GQSSDHVATK FCKGTANSFQ RGLFSTLAFA  960
AKYRAQNMNQ SIGSTDTQVD KGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490511RKRGPPNKEKKERKKAKERKKR
2502524RKKAKERKKRAEKNRELGVKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015628.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352677.10.0PREDICTED: zinc finger CCCH domain-containing protein 65
RefseqXP_009352678.10.0PREDICTED: zinc finger CCCH domain-containing protein 65
TrEMBLA0A498I0150.0A0A498I015_MALDO; Uncharacterized protein
STRINGXP_009352677.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323