PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr015364.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 281aa MW: 31448 Da PI: 6.7988

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr015364.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	134.6	6.7e-42	4	141	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGf+F+Pt+eel+++yL++k++g + ++++i+ v iy+++Pw+Lp+ +++++ ++w+fF++r++++a+g r++r t++g+Wkatg+ Pbr015364.1 4 LPPGFKFSPTEEELISFYLQNKLDGMSedlnRVVDRIIPVVYIYEFNPWELPQaageAIHGDPEQWFFFIPRQESEARGGRQRRLTTTGFWKATGSPS 101 79*********************9966533334479999******9646655666778****************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127 +v+s+ + +++gl++t+vfy+grap+g+kt+W m+ey+ Pbr015364.1 102 TVYSSnsnNYRAIGLRRTMVFYTGRAPHGKKTEWKMNEYK 141 95544455*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-43	3	181	IPR003441	NAC domain
PROSITE profile	PS51005	46.495	4	181	IPR003441	NAC domain
Pfam	PF02365	8.3E-22	5	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MEDLPPGFKF SPTEEELISF YLQNKLDGMS EDLNRVVDRI IPVVYIYEFN PWELPQAAGE 60 AIHGDPEQWF FFIPRQESEA RGGRQRRLTT TGFWKATGSP STVYSSNSNN YRAIGLRRTM 120 VFYTGRAPHG KKTEWKMNEY KAIEIHADDN NQPSMAASSS NPSTPTPSLR QEFGLCRVYK 180 KSKCLRAFDR RPPGIEITRK PNLNIQAAPA QAADLLDQGL TTSNRNPQNM EGRTNSSSSE 240 SSSSGGYGSQ SSQPEQSGTL PRAVDNEAIW DLDQLIKFLL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-30	4	181	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-30	4	181	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-30	4	181	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-30	4	181	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	4e-30	4	181	20	168	NAC domain-containing protein 19
3swm_B	4e-30	4	181	20	168	NAC domain-containing protein 19
3swm_C	4e-30	4	181	20	168	NAC domain-containing protein 19
3swm_D	4e-30	4	181	20	168	NAC domain-containing protein 19
3swp_A	4e-30	4	181	20	168	NAC domain-containing protein 19
3swp_B	4e-30	4	181	20	168	NAC domain-containing protein 19
3swp_C	4e-30	4	181	20	168	NAC domain-containing protein 19
3swp_D	4e-30	4	181	20	168	NAC domain-containing protein 19
4dul_A	3e-30	4	181	17	165	NAC domain-containing protein 19
4dul_B	3e-30	4	181	17	165	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	74	86	RQESEARGGRQRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr015364.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372524.1	0.0	PREDICTED: NAC domain-containing protein 90-like
TrEMBL	A0A498IJM7	1e-176	A0A498IJM7_MALDO; Uncharacterized protein
STRING	XP_009372524.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-55	NAC domain containing protein 90