PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015363.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 282aa    MW: 31514.1 Da    PI: 7.1284
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015363.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1362.5e-4241411127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                  lppGfrF+Pt+eel+++yL++k++g++      ++++i+ v iy+++Pw+Lp+    +++++ ++w+fF++r++ +a+g r++r t++gyWkatg+  
  Pbr015363.1   4 LPPGFRFSPTEEELISFYLQNKLDGTSedlnRVVDRIIPVVYIYEFNPWELPQaageAIHGDPEQWFFFIPRQECEARGGRPRRLTTTGYWKATGSPS 101
                  79***********************9966533334479999**********9646655666778********************************** PP

          NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                  +v+s+   + +++glk+t+vfy+grap+g+kt+W m+ey+
  Pbr015363.1 102 TVYSSnssNYRAIGLKRTMVFYTGRAPHGKKTEWKMNEYK 141
                  ****95555556***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-453182IPR003441NAC domain
PROSITE profilePS5100547.184182IPR003441NAC domain
PfamPF023651.8E-225141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEDLPPGFRF SPTEEELISF YLQNKLDGTS EDLNRVVDRI IPVVYIYEFN PWELPQAAGE  60
AIHGDPEQWF FFIPRQECEA RGGRPRRLTT TGYWKATGSP STVYSSNSSN YRAIGLKRTM  120
VFYTGRAPHG KKTEWKMNEY KAIAIHADDN NQPSMTASSS NPSTPPTPTL RQEFSLCRVY  180
KKSKCLRAFD RRPSGIEITR NPNLNIQAAP AQAADHLDKG LTTSNRNPQN MEGRTNSSSP  240
ESSYSGGHGS QSSQPEQSGT LPMAVNNEAI WDLDQLIHLL L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-32418217165NO APICAL MERISTEM PROTEIN
1ut4_B3e-32418217165NO APICAL MERISTEM PROTEIN
1ut7_A3e-32418217165NO APICAL MERISTEM PROTEIN
1ut7_B3e-32418217165NO APICAL MERISTEM PROTEIN
4dul_A3e-32418217165NAC domain-containing protein 19
4dul_B3e-32418217165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015363.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372523.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLA0A498IJM71e-180A0A498IJM7_MALDO; Uncharacterized protein
STRINGXP_009372523.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-56NAC domain containing protein 90