PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr015297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 38915.1 Da PI: 10.2912 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.8 | 3.3e-31 | 285 | 342 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYeg+Hnh+ Pbr015297.1 285 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGDHNHS 342 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.7E-17 | 235 | 281 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 271 | 342 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.676 | 278 | 344 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 280 | 342 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 283 | 343 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 285 | 341 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAVDFMGYRN TSSNSSFSAK LEENAVQEAA SGLQSVEKLI RLLSQAQQNQ HQDKYPSTAM 60 DMDCRAVADV AVSKFKKVIS LLGRTRTGHA RFRRAPLSKF KKVISLLGRT RTGHARLGGA 120 PLTLTPGSSF QPQYQSHSQD IVVKQAPLES TEVYHATPIQ QIPPPHHHHH SMVLESTMDS 180 SNTINFSYSA ATSFMSSLTG DSDSKQPMSS SAFQITNLSQ VSSAGKPPLS STSLKRKCGS 240 ENLGSGKCGV GSSGRCHCSK KRKLRQKRVV RVPAISLKMA DIPPDDYSWR KYGQKPIKGS 300 PHPRGYYKCS SVRGCPARKH VERALDDPAM LVVTYEGDHN HSLSVAETSN LILESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-21 | 280 | 343 | 14 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 6e-21 | 280 | 343 | 14 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr015297.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ598139 | 0.0 | FJ598139.1 Malus hupehensis WRKY transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018506496.1 | 0.0 | PREDICTED: probable WRKY transcription factor 15 | ||||
Swissprot | Q9STX0 | 4e-87 | WRKY7_ARATH; Probable WRKY transcription factor 7 | ||||
TrEMBL | A0A498HZG0 | 0.0 | A0A498HZG0_MALDO; Uncharacterized protein | ||||
STRING | XP_009372435.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24240.1 | 8e-75 | WRKY DNA-binding protein 7 |