PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr015291.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | AP2 | ||||||||
Protein Properties | Length: 554aa MW: 60901.5 Da PI: 6.5165 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.2 | 7.3e-17 | 184 | 233 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Pbr015291.2 184 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 233 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.8 | 2.7e-13 | 276 | 326 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ +Aa+a+++a+ k +g Pbr015291.2 276 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIDAARAYDKAAIKCNG 326 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.77E-15 | 184 | 242 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.6E-9 | 184 | 233 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-32 | 185 | 247 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.71E-11 | 185 | 240 | No hit | No description |
PROSITE profile | PS51032 | 17.622 | 185 | 241 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-17 | 185 | 241 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-16 | 276 | 336 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-8 | 276 | 326 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.44E-24 | 276 | 336 | No hit | No description |
SMART | SM00380 | 8.0E-31 | 277 | 340 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-16 | 277 | 334 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.29 | 277 | 334 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 278 | 289 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-6 | 316 | 336 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MWDLNDSPDQ RPRGEESEGC SSQKTSADGD EEKGKRVGSV SNSSSSAVVI EEDGSDEEED 60 QDDGPTKLAK KRGGGGGGGG GKIFGFSVTH EESMDSDPPV TVTRQFFPVE QDDSSSNFDV 120 MGSAAGGGSI PPPPSTSSSF PRAHWVGVNF GQSDSGSPGK PPPTAEASHQ PMKKSRRGPR 180 SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF 240 TIEDYEEDLK QMSNLTKEEF VHVLRRQSTG FPRGSSKYRG VTLHKCGRWE ARMGQFLGKK 300 YVYLGLFDTE IDAARAYDKA AIKCNGKEAV TNFDPSIYEN ELNPSESSGV NAADHDLDLS 360 LGSSNSKKNN QALGNDNNSQ NAALERQHSV SMQFDADWRS QGFRPKLNIQ RDRSRDDIDA 420 QRKDGYLESE AMQLLLRTNL QSQVPAEMHK YGQFSSRRPT AEDIQMPHNF PPHFNSPNYH 480 HIQFPSSSEG GGRIGSDLSL SMSDHHHQWQ SATPTSDLFA TAAASSGFPP QIRPSTAQNG 540 WLQKNGFHSL TRR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 81 | RGGGGGGGGGK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr015291.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM506584 | 0.0 | KM506584.1 Eriobotrya japonica transcription factor AP2-1 (AP2-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009372425.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-124 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A0H3YBC6 | 0.0 | A0A0H3YBC6_9ROSA; Transcription factor AP2-1 | ||||
STRING | XP_009372425.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-113 | AP2 family protein |