PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015178.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YC
Protein Properties Length: 312aa    MW: 34549.6 Da    PI: 4.111
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015178.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC41.92.2e-131141991296
        NF-YC  12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96 
                  ++++  + e+P  r+k+i+k d d+++i +ea  l+s + +lf+  l+ rs   a e kr+ +k   +  av+r   + dfl+d+ 
  Pbr015178.1 114 RNANRIRPEFPNGRVKRIMKLDRDINKINSEALLLVSCSAQLFVEFLAERSAEVATERKRKVVKLEHMRVAVKRHRpTCDFLIDEL 199
                  455556779***************************************************************9975489*****75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.37E-16117200IPR009072Histone-fold
Gene3DG3DSA:1.10.20.107.4E-17117186IPR009072Histone-fold
PfamPF008081.8E-17122185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MAEEEIAARE EENPAGEEEN PAQEGEENPV PEGEENPVPE GEENPVPEEE ENPAQEEENP  60
VPGEEEENPA GEQEEENPVP EGEENPVPEE EEENPAREKE KAAKGKGKAV AEERNANRIR  120
PEFPNGRVKR IMKLDRDINK INSEALLLVS CSAQLFVEFL AERSAEVATE RKRKVVKLEH  180
MRVAVKRHRP TCDFLIDELT VPSQPSDHPA TDRSQGRSVV SSSAPAKRDR SRTAADRPAP  240
AGTRRIDGFF HKLAKKSPIQ TEEAPIEIDE ASIETDDAPI EVDDVPIESD EASIENEEPL  300
IEAHEAPIEI N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015178.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506455.10.0PREDICTED: uncharacterized protein LOC103961505
TrEMBLA0A498HPR11e-134A0A498HPR1_MALDO; Uncharacterized protein
STRINGXP_009372331.11e-161(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-43nuclear factor Y, subunit C13