PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015152.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 312aa    MW: 35195.2 Da    PI: 9.7727
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015152.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.41.1e-3941117278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC++dls++++yhrrhkvCe hsk+++v+++g+e+rfCqqCsrfh+l efDe+krsCrrrL++hn+rrrk+q+
  Pbr015152.1  41 CLVDGCNSDLSKCRDYHRRHKVCELHSKTSKVTIKGQERRFCQQCSRFHSLVEFDEGKRSCRRRLDGHNKRRRKRQS 117
                  **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.5E-3234102IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.49638115IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-3739120IPR004333Transcription factor, SBP-box
PfamPF031104.2E-2941114IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEDGSRGKLK DPGVSMRKPS SSTTSLKRPR QPNNETKIAA CLVDGCNSDL SKCRDYHRRH  60
KVCELHSKTS KVTIKGQERR FCQQCSRFHS LVEFDEGKRS CRRRLDGHNK RRRKRQSESM  120
STNLGRFLSN YQGTRFLSFG NPQMCAANAV MNSPWGYALK PENDSVLLDN HSQLNETRRS  180
SYTYREKQIP FVQGFEYAHS EASVYQPFTN ANFAQGNSSN SHRMFANGLY RDRESNCALS  240
LLSWTRATQE EIGLSHTAQS SSVCPAQSMI PRIHYNNVGV QDEAAISNLV SDGNSIGNLH  300
CQGKFQNSNY S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-2838114884squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015152.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372254.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLA0A498HJD10.0A0A498HJD1_MALDO; Uncharacterized protein
STRINGXP_009372254.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-47SBP family protein