PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015096.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 414aa    MW: 46803.2 Da    PI: 6.7063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015096.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98e-53251512128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                  +pGfrFhPtdeel+++yL+ kv + +++    i+evd++++ePw+Lp  +k +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd++v+s+ +g+
  Pbr015096.1  25 QPGFRFHPTDEELITFYLASKVYNGSFRG-VRIAEVDLNRCEPWELPDVAKMGEREWYFFSLRDRKYPTGMRTNRATGAGYWKATGKDRQVFSAsTGA 121
                  69************************999.55***************8888899**************************************987888 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  l g+kktLvfykgrap+g+kt+Wvmheyrl
  Pbr015096.1 122 LLGMKKTLVFYKGRAPRGHKTKWVMHEYRL 151
                  9***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6121174IPR003441NAC domain
PROSITE profilePS5100557.7324174IPR003441NAC domain
PfamPF023653.4E-2726151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MLGMGMEEVM SELMSGEDEN GQGFQPGFRF HPTDEELITF YLASKVYNGS FRGVRIAEVD  60
LNRCEPWELP DVAKMGEREW YFFSLRDRKY PTGMRTNRAT GAGYWKATGK DRQVFSASTG  120
ALLGMKKTLV FYKGRAPRGH KTKWVMHEYR LDGHFSSYRH DCQEEWVICR INHKSGKKKS  180
PLLDHEAAAS AISNCNYLPP LLDPSPALLL QESCHDHQNP IQLQALPPPI HQENHDTFSS  240
FPAINAFQTH QLPSFSRSLL FKSLFDQDCN SNSSSSTVPK QCKTELANYF SRFQTPDNSH  300
NNNNSTRNNL HDLNFVVELE KNHDHQYQPN PPYHHLHDQY NDLLPFDYLD YSTSVLGFSS  360
AEAAEATTST STATAAVHAH DTSPSVVFTR AGFQTMLDLP PIKLPGESCR PYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-482617422168NAC domain-containing protein 19
3swm_B3e-482617422168NAC domain-containing protein 19
3swm_C3e-482617422168NAC domain-containing protein 19
3swm_D3e-482617422168NAC domain-containing protein 19
3swp_A3e-482617422168NAC domain-containing protein 19
3swp_B3e-482617422168NAC domain-containing protein 19
3swp_C3e-482617422168NAC domain-containing protein 19
3swp_D3e-482617422168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015096.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981210.0KF198121.1 Malus hupehensis NAC domain protein (NAC80) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372622.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8514e-92NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A498JSG50.0A0A498JSG5_MALDO; Uncharacterized protein
STRINGXP_009372622.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.12e-93NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]