PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 387aa MW: 42601.6 Da PI: 6.4552

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr015019.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.5	1.4e-33	194	252	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+agC vkk+vers++dp++v++tYeg+H+h+ Pbr015019.1 194 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSTVVTTYEGQHTHP 252 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-35	179	254	IPR003657	WRKY domain
SuperFamily	SSF118290	5.75E-30	186	254	IPR003657	WRKY domain
PROSITE profile	PS50811	33.315	189	254	IPR003657	WRKY domain
SMART	SM00774	1.1E-40	194	253	IPR003657	WRKY domain
Pfam	PF03106	2.1E-27	195	252	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDGREEKLKT TDRSNSMANS AVFSDEIPTN FPSFSGIFDL PSSCEDQKGS LGGFMDLLGI 60 PDYAPSLFDF PQTTSSLMMM PPHHNQQESL PSPASTSTVV ALPERESATT TNTTSEVLNS 120 STAPTTPNSS SISSSSNEAG ANNNEGQMTK VQEEEADEQD PEKTQKQLKP KKKNQKRQRE 180 PRFAFMTKSE VDNLDDGYRW RKYGQKAVKN SPYPRSYYRC TTAGCGVKKR VERSSDDPST 240 VVTTYEGQHT HPSPITPRGT MGIAPLPHQS TGFISAAEAS SNPFGVQQCL PHHHHYQQQQ 300 QHQYAYMYQS SPSLNISSST YGGGAGGGPF NPSSFSTSLL QERYNFEGPP SSSSATNFLR 360 DHGLLQDIVP QIRKEPKEED HHHQHQ*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDGREEKLKT TDRSNSMANS AVFSDEIPTN FPSFSGIFDL PSSCEDQKGS LGGFMDLLGI  60
PDYAPSLFDF PQTTSSLMMM PPHHNQQESL PSPASTSTVV ALPERESATT TNTTSEVLNS  120
STAPTTPNSS SISSSSNEAG ANNNEGQMTK VQEEEADEQD PEKTQKQLKP KKKNQKRQRE  180
PRFAFMTKSE VDNLDDGYRW RKYGQKAVKN SPYPRSYYRC TTAGCGVKKR VERSSDDPST  240
VVTTYEGQHT HPSPITPRGT MGIAPLPHQS TGFISAAEAS SNPFGVQQCL PHHHHYQQQQ  300
QHQYAYMYQS SPSLNISSST YGGGAGGGPF NPSSFSTSLL QERYNFEGPP SSSSATNFLR  360
DHGLLQDIVP QIRKEPKEED HHHQHQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-30	184	254	7	77	Probable WRKY transcription factor 4
2lex_A	2e-30	184	254	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr015019.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN609590	5e-70	JN609590.1 Gossypium hirsutum WRKY48 mRNA, complete cds.
GenBank	JQ081266	5e-70	JQ081266.1 Gossypium hirsutum WRKY5 transcription factor (WRKY5) mRNA, complete cds.
GenBank	KF669855	5e-70	KF669855.1 Gossypium hirsutum WRKY transcription factor 95 (WRKY95) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009372109.1	0.0	PREDICTED: probable WRKY transcription factor 48 isoform X1
Swissprot	Q9FGZ4	2e-58	WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBL	D9ZJG1	0.0	D9ZJG1_MALDO; WRKY domain class transcription factor
STRING	XP_009372109.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1002	34	114

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	2e-50	WRKY DNA-binding protein 48

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]