PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014973.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family CAMTA
Protein Properties Length: 1002aa    MW: 112756 Da    PI: 7.1348
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014973.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.71e-53201353117
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e k+rwl++ ei++iL n++++elt++++ rp+ gsl L++rk +ryfrkDG+ w+kk+dgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+y
  Pbr014973.1  20 QEaKNRWLRPAEICEILRNYRHFELTTDPPVRPPAGSLYLFDRKALRYFRKDGHRWRKKRDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNANFQRRSY 117
                  5559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylev 117
                  w+L+++l++ivlvhy++v
  Pbr014973.1 118 WMLDTHLQHIVLVHYRNV 135
                  ****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.1115141IPR005559CG-1 DNA-binding domain
SMARTSM010765.5E-7418136IPR005559CG-1 DNA-binding domain
PfamPF038593.2E-4821135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.1E-7426516IPR013783Immunoglobulin-like fold
SuperFamilySSF812968.82E-18428515IPR014756Immunoglobulin E-set
CDDcd001024.98E-7428516No hitNo description
PfamPF018334.7E-7428514IPR002909IPT domain
SuperFamilySSF484031.83E-14586723IPR020683Ankyrin repeat-containing domain
CDDcd002042.60E-11611720No hitNo description
Gene3DG3DSA:1.25.40.201.5E-14619726IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.645619722IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.644661693IPR002110Ankyrin repeat
SMARTSM002480.026661690IPR002110Ankyrin repeat
SMARTSM00248540700729IPR002110Ankyrin repeat
SuperFamilySSF525402.48E-8776886IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM00015440779801IPR000048IQ motif, EF-hand binding site
SMARTSM000150.37835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.425836865IPR000048IQ motif, EF-hand binding site
PfamPF006120.0068838856IPR000048IQ motif, EF-hand binding site
SMARTSM000151.4E-4858880IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.798859883IPR000048IQ motif, EF-hand binding site
PfamPF006123.3E-5861880IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1002 aa     Download sequence    Send to blast
MADTRRYAPN QHLDLAQILQ EAKNRWLRPA EICEILRNYR HFELTTDPPV RPPAGSLYLF  60
DRKALRYFRK DGHRWRKKRD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNA NFQRRSYWML  120
DTHLQHIVLV HYRNVEEANS AARMVQTSFG SSPLQTSFAS SPVHTSFASS PNRVDLGRQT  180
EFEDVDSRRD AGTSSVEQPM FGSFFHNASL LPQQVGGFPE SFRDPSSTWY GGPKFDHGAG  240
LSAWQGMDSS TRNEHIMHGQ NLFVEEPNRA DFITLKLTDA KVDAHSGVKD VTCEDRLTTN  300
IDVQIVSAPS QRADQVPKEH DFNVLHPEVQ DYSDPQIVVT PSNQVEENRD GGVRNEPVEL  360
KKLDSFGRWM DKEIGVDCDD SLMASDSGNY WSTFDAESGD KEVSSLSHHM QLDIESLGPS  420
LSQEQLFTIS DFSPDWAYSG TETKVLIVGS FLGSKKDCAD TNWGCMFGEI EVSAEILSNN  480
AIRCQTPLHA PGRVPFYVTG RNRLACSEIR EFEYREKPIG IAINRLRDDE LCFQIRLAKL  540
LSLGSERKWL ICAVPDCDKC KLKSSIFSMR SNRESDWVTI DGASMACESD HLSRRDVLIQ  600
NLLKDRLCEW LVCKIHEGGK GLHVLDNEGQ GVLHLTGALG YEWAIGPIIA AGVSPNFRDA  660
HGRTGLHWAS YFGREETVIA LLRLGAAPGA VEDPTSVFPG GQTAADLASS RGHKGIAGYL  720
AEADLTSHLE LLTMNENIMN NATATIAAEK AKQTAEVAAS DVAVDEQHFL KNPIAAVRKS  780
AHAAALIQEA FRARSFRQRQ LTKSRADISE VQSQDLVARR SLKRVQKFAH YEDYLHVAAA  840
LKIQQNYRGW KGRKDYLKIR DRIVKIQAHV RGHQVRKNYK KVLWSVGILE KVILRWRRKG  900
TGLRGFRVEK PTEDASSEVK KNDDYEFLSV GRKQKFAGVE KALARVRSMA RQPEAREQYM  960
RLLSNFEKLE IADGENQASN QNESSDEKFI DEVLRAHNEG Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014973.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372048.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A498I8I60.0A0A498I8I6_MALDO; Uncharacterized protein
STRINGXP_009372048.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains