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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr014767.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 202aa MW: 21895.1 Da PI: 10.1309 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.6 | 1.8e-17 | 5 | 53 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 +ppGfrFhPt+eelv +yLk+k+++ +++l +vi ++d+yk+ePwd++++ Pbr014767.2 5 VPPGFRFHPTEEELVGYYLKRKINSLHIDL-DVIVDIDLYKIEPWDIQHA 53 69****************************.99**************842 PP | |||||||
2 | GATA | 22.2 | 2e-07 | 64 | 79 | 18 | 33 |
GATA 18 gnktLCnaCGlyyrkk 33 +LCnaCG++yrkk Pbr014767.2 64 SAASLCNACGIRYRKK 79 4567**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.32E-18 | 3 | 54 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 12.719 | 5 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-8 | 6 | 50 | IPR003441 | NAC domain |
Gene3D | G3DSA:3.30.50.10 | 4.1E-4 | 63 | 79 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MESCVPPGFR FHPTEEELVG YYLKRKINSL HIDLDVIVDI DLYKIEPWDI QHASAAAARN 60 TDASAASLCN ACGIRYRKKI PTVSLCKGPK RWKKDKPYGS STTSTITTPA TTNTAASASA 120 SATTTTTSTT ARKAKIGGRG GRTDLSESLQ VKLVAFGKDV CLQGTPPVQK KRRYQKRRRE 180 MGEVEQAAVC LLAMSSHSVF G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr014767.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC770068 | 1e-103 | KC770068.1 Pyrus pyrifolia microsatellite TXY181 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352157.1 | 2e-93 | PREDICTED: uncharacterized protein LOC103943571 | ||||
TrEMBL | A0A498IG79 | 9e-41 | A0A498IG79_MALDO; Uncharacterized protein | ||||
STRING | XP_009352156.1 | 1e-100 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71930.1 | 2e-17 | vascular related NAC-domain protein 7 |