PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014724.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 171aa    MW: 19643.3 Da    PI: 9.0135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014724.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182983256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 rk+ ++tkeq + Lee F++++++++ +++ LA++l+L+ rqV vWFqNrRa+ k
  Pbr014724.1 29 RKKLRLTKEQSTLLEESFNRHSTLNQVQKQSLAEQLNLKPRQVEVWFQNRRARTK 83
                 678899***********************************************98 PP
2HD-ZIP_I/II119.22.2e-3829117189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq++lLEesF+++++L++ +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL++
  Pbr014724.1  29 RKKLRLTKEQSTLLEESFNRHSTLNQVQKQSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLSDENRRLKKELQELKS 117
                  69*************************************************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.13E-181586IPR009057Homeodomain-like
PROSITE profilePS5007117.3462585IPR001356Homeobox domain
SMARTSM003898.1E-152789IPR001356Homeobox domain
CDDcd000861.66E-142986No hitNo description
Gene3DG3DSA:1.10.10.601.9E-172983IPR009057Homeodomain-like
PfamPF000465.1E-162983IPR001356Homeobox domain
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PfamPF021832.5E-1085118IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.6E-1985130IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDEDEESYER SIDHTNNKSV IMNNKNGVRK KLRLTKEQST LLEESFNRHS TLNQVQKQSL  60
AEQLNLKPRQ VEVWFQNRRA RTKLKQTEVD CEFLKKCCES LSDENRRLKK ELQELKSLNA  120
NGTSPLYIQI PKATMPPVCP SCEKMVKAHE NNPAAAKNAE DLNVVRKSSD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17785RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014724.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342828.11e-121PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466045e-54HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A498HPF71e-111A0A498HPF7_MALDO; Uncharacterized protein
STRINGXP_009342828.11e-120(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-56HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]