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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr014583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 26201.1 Da PI: 9.4745 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 72 | 91 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Pbr014583.1 72 FACSICSKTFNRYNNMQMHM 91 78*****************9 PP | |||||||
2 | zf-C2H2 | 12 | 0.00063 | 156 | 178 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C k+F k + ++H +++ Pbr014583.1 156 FMCRKCAKTFAVKGDWRTHEKNC 178 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.38E-6 | 63 | 95 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-6 | 72 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.17 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 190 | 119 | 151 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.08E-5 | 142 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 142 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 78 | 156 | 176 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEKVTVALHI GLPNSTSSTG DKSETYDENK KVLNLKEEQV VMKKSIHGCS FKAESRFWIP 60 TPAQVLVGPM QFACSICSKT FNRYNNMQMH MWGHGSEYRK GPDSLKGTQP AAMLRLPCYC 120 CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK CAKTFAVKGD WRTHEKNCGK 180 LWYCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFHEDE KECVTGSEEE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr014583.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009364303.1 | 1e-174 | PREDICTED: zinc finger protein WIP3-like | ||||
Refseq | XP_009371915.1 | 1e-174 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 1e-116 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A498K926 | 1e-171 | A0A498K926_MALDO; Uncharacterized protein | ||||
STRING | XP_009364303.1 | 1e-174 | (Pyrus x bretschneideri) | ||||
STRING | XP_009371915.1 | 1e-174 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 1e-118 | WIP domain protein 3 |
Publications ? help Back to Top | |||
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