PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr014209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 105aa MW: 12247.5 Da PI: 5.689 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.3 | 6.6e-15 | 9 | 83 | 3 | 72 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgk 72 +G++FhP+deelv +yL kv+g +++ e++i+e+d+y + e +d+ + + ++++++yfF+k + ++a+g+ Pbr014209.1 9 VGYKFHPRDEELVEYYLYSKVRGAPFRDEHAIPEIDLYGSmEARDIWNnnggQNLEKDEDLYFFTKLKPASAKGT 83 8*************************99999******965499999633444333467799*****999988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-13 | 3 | 86 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 14.213 | 7 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-9 | 9 | 90 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MAPSNNFSVG YKFHPRDEEL VEYYLYSKVR GAPFRDEHAI PEIDLYGSME ARDIWNNNGG 60 QNLEKDEDLY FFTKLKPASA KGTGSHDRVW DMERRELRDQ SRRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr014209.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008385925.1 | 3e-42 | NAC domain-containing protein 41-like | ||||
TrEMBL | A0A498IKW7 | 1e-41 | A0A498IKW7_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498KD13 | 3e-42 | A0A498KD13_MALDO; Uncharacterized protein | ||||
STRING | XP_009372720.1 | 7e-43 | (Pyrus x bretschneideri) | ||||
STRING | XP_008366403.1 | 1e-43 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 7e-10 | NAC domain containing protein 50 |