PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pbr014170.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

Dof

Protein Properties

Length: 293aa MW: 32238.5 Da PI: 7.2809

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr014170.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129.1	1.3e-40	27	88	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Pbr014170.1 27 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 88 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-34	29	85	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-27	30	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MSAESLDMLV CSKSQQQQQD RKPRPQPEQA LKCPRCDSTN TKFCYYNNYS LSQPRYFCKS 60 CRRYWTKGGT LRNVPVGGGC RKNKRSSSTK RAQDQPLTPN SNPLPALGYD SNDLTLAFAR 120 LQRQQSCGGQ LGFDDHDHIT LLGNPTNAPD HNILGNPTSA PGFLDALRTG FLETHNGNFE 180 NLYNYGYGNG NGNLGEVEDC GGGMGIHHPF EEATTNSTTT AVTVTTMKQE LFNGQSESSN 240 KVLWGFPWQM NGGDHHSNMV GNGNHEYDSG RESWNGIASS WQHGLLHTTP LV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr014170.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352402.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
Refseq	XP_009352403.1	0.0	PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBL	D9ZIX6	0.0	D9ZIX6_MALDO; DOF domain class transcription factor
STRING	XP_009352402.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009352403.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5026	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	4e-49	Dof family protein