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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pbr014032.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
MYB_related |
| Protein Properties |
Length: 470aa MW: 53090.7 Da PI: 9.6444 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr014032.3 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 22 | 3.8e-07 | 140 | 181 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
WT+eE ++l ++++q+ + + Ia ++ Rt +++k+r++k
Pbr014032.3 140 WTKEETDQLFELCQQFDLR-FIVIADRFSSSRTVEELKERYYK 181
*******************.*********9************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MDAKDILGLP KSTHPASQEK KSRPLKESQR KPDGISREVY ALTGGVPPLM PAVEPLQLKK 60
RPPTDEKITW QWLPFTSSAR KDNLQLYHWV IVVNGIPPTG DYSFAKYNKV QLSLIVLGKS 120
VDVVKYTDEE YEKHLTDDMW TKEETDQLFE LCQQFDLRFI VIADRFSSSR TVEELKERYY 180
KVSRSILIAR AAAFPGNVSE HPIVKEPYKF TQERDRKRAL SMVLSPTKHQ ERKDYEVLAE 240
AKRIAESHMA ARNAKESELL VTFTMDSERA IVFGETLSPP SNSEFAPAMV AHSTSMAENA 300
STLVSLRMLR VYLRTYALDQ MIQAASSSAG LRTIKRVEQS LQELGVNLKP RVPTKAVCAQ 360
HLDLRKEILT LLNLQKQLQH KEAEGSSYRD GPYETPGTPK DRTFVPDSTS FGGEVLECTS 420
STVDLIYIHW MSGNRVGKRD QKRNALGRAE APSLPAQSKR PRKLRASDL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3hm5_A | 2e-18 | 101 | 196 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
| 4iej_A | 2e-18 | 101 | 196 | 4 | 91 | DNA methyltransferase 1-associated protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
