PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013757.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 542aa    MW: 59970.5 Da    PI: 7.4035
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013757.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.5e-16741135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Pbr013757.1  7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41
                 ****************55555***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004018.9E-10155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.76E-11546No hitNo description
CDDcd002029.63E-17654No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.0E-14741IPR000679Zinc finger, GATA-type
PfamPF139194.5E-9289372IPR028020ASX homology domain
PfamPF165501.6E-9294366IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDIEDH  60
RVSRVKSISV NKNKEIKLVK RKQNPESMVI GGVNSDYSHG FRKIIEEDKS NRSSSGSAVS  120
NSESCAQFGS GDASDLTGPA QSMVWDSMVP SRKRTCIGRL KPSPVEKLTK DLYTILHEQQ  180
SSCFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPNSIAR EEESEASSIS VDNKQCLANE  240
VYSHSATLFV HNNKGVNMAS TVSGRMNNVA GQGMQYEPLK RDKSQLDNFQ ILGNHNSPLR  300
HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVVKFPYS LKSMFDSPQF RENLTSLQQL  360
LAEGVFDISF PGVKTEDCKT LKRLALSNSP KSKWVERYHL LKKCKTSSGK SVVSGLNMAS  420
SNLRHVKRLW DNETQSFPDA KIMKSPKRII MKGSYENKDP MDYDGGSCFS PKSLFALPTD  480
GGSFLMDSMN FVDESSDQDL LLDVPSNGSF AQAELLHPAM SFGAPQASTS SSSIYPHVLH  540
P*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013757.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371047.10.0PREDICTED: GATA transcription factor 26-like isoform X2
SwissprotQ8W4H11e-162GAT26_ARATH; GATA transcription factor 26
TrEMBLD9ZIZ50.0D9ZIZ5_MALDO; GATA domain class transcription factor
STRINGXP_009371047.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-161GATA transcription factor 26