PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013757.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | GATA | ||||||||
Protein Properties | Length: 542aa MW: 59970.5 Da PI: 7.4035 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.8 | 4.5e-16 | 7 | 41 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Pbr013757.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 ****************55555***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 8.9E-10 | 1 | 55 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.76E-11 | 5 | 46 | No hit | No description |
CDD | cd00202 | 9.63E-17 | 6 | 54 | No hit | No description |
PROSITE profile | PS50114 | 11.345 | 7 | 40 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.5E-12 | 7 | 41 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 7.0E-14 | 7 | 41 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF13919 | 4.5E-9 | 289 | 372 | IPR028020 | ASX homology domain |
Pfam | PF16550 | 1.6E-9 | 294 | 366 | IPR032368 | UCH-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLVNYTPLHA RAEPDDIEDH 60 RVSRVKSISV NKNKEIKLVK RKQNPESMVI GGVNSDYSHG FRKIIEEDKS NRSSSGSAVS 120 NSESCAQFGS GDASDLTGPA QSMVWDSMVP SRKRTCIGRL KPSPVEKLTK DLYTILHEQQ 180 SSCFSGSSEE DLLFESETPM VSVEIGHGSV LIRHPNSIAR EEESEASSIS VDNKQCLANE 240 VYSHSATLFV HNNKGVNMAS TVSGRMNNVA GQGMQYEPLK RDKSQLDNFQ ILGNHNSPLR 300 HVDLNDILNF EEFTRQLTNE EQQQLLKHLP PVDVVKFPYS LKSMFDSPQF RENLTSLQQL 360 LAEGVFDISF PGVKTEDCKT LKRLALSNSP KSKWVERYHL LKKCKTSSGK SVVSGLNMAS 420 SNLRHVKRLW DNETQSFPDA KIMKSPKRII MKGSYENKDP MDYDGGSCFS PKSLFALPTD 480 GGSFLMDSMN FVDESSDQDL LLDVPSNGSF AQAELLHPAM SFGAPQASTS SSSIYPHVLH 540 P* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013757.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009371047.1 | 0.0 | PREDICTED: GATA transcription factor 26-like isoform X2 | ||||
Swissprot | Q8W4H1 | 1e-162 | GAT26_ARATH; GATA transcription factor 26 | ||||
TrEMBL | D9ZIZ5 | 0.0 | D9ZIZ5_MALDO; GATA domain class transcription factor | ||||
STRING | XP_009371047.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4424 | 31 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-161 | GATA transcription factor 26 |