PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 27442.5 Da PI: 4.9256 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.7e-20 | 37 | 88 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq+ Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k Pbr013533.1 37 RRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWK 88 48*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.4 | 9.6e-39 | 36 | 126 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq++lLE+ Fe+++kLep+rKv+lareLglqprqva+WFqnrRAR+k+kq+E+d ++L++ yd l+++ e+L++e+++L +l++ Pbr013533.1 36 TRRFSDEQISLLESIFEADSKLEPRRKVQLARELGLQPRQVAIWFQNRRARWKSKQMERDLRSLREDYDMLASRFESLKEEKQSLLMQLQK 126 69************************************************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.88E-19 | 27 | 91 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-18 | 29 | 94 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 17.281 | 30 | 90 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.50E-16 | 37 | 91 | No hit | No description |
Pfam | PF00046 | 3.4E-17 | 37 | 88 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 37 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.4E-6 | 61 | 70 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.4E-6 | 70 | 86 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.1E-12 | 90 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MERRKEECYE EENLDYVSGL EPQFATKRKK NKGTNTRRFS DEQISLLESI FEADSKLEPR 60 RKVQLARELG LQPRQVAIWF QNRRARWKSK QMERDLRSLR EDYDMLASRF ESLKEEKQSL 120 LMQLQKLNDL VGTSRDGAPT EDSLVNQTVD GSSYKDGNCE TTAQVRLEEE LEQRGVIDSH 180 TSNDFGGEYG DERHDELPKI GPLDASATPQ ELHRLDSGSI LFDPSRCNLH WLNFWA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 26 | 37 | KRKKNKGTNTRR |
2 | 82 | 90 | RRARWKSKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013533.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009351938.1 | 1e-175 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A498KJ65 | 1e-165 | A0A498KJ65_MALDO; Uncharacterized protein | ||||
STRING | XP_009351938.1 | 1e-174 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12005 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 3e-40 | homeobox 7 |