PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013450.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family E2F/DP
Protein Properties Length: 506aa    MW: 56152.4 Da    PI: 9.9097
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013450.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27222305271
      E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                 d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  Pbr013450.2 222 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnavtspdqqqqdDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 305
                  789********...*****999********************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.5E-45217310IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-33221305IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.3E-24223305IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.98E-20224306IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144587.92E-36310439IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.8E-5311341No hitNo description
SMARTSM011381.4E-58312500IPR014889Transcription factor DP, C-terminal
PfamPF087812.3E-28358452IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.43E-28358451No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MAKFNEVQKR RRAQKAEKKR SVHGEPTTGK LHNKPQPLSI SGKRKRKLLK KWRRDQNEAV  60
KKGLITMQDV EMAAADADGV EESKDTKTSS SKFPMKKKSL KIKQLKGKGK KKGKSSKAAA  120
AATPEASADA MLEMGTRSQQ QPGRERVGQE DDDMAGGQSV SMSGSVGSPS SRREQTMATP  180
AGDNSFLRLN HPDVHGDDAG SQGAVGSKKK KRGQRAVAGD KNGRGLRQFS MKVCEKVESK  240
GRTTYNEVAD ELVAEFADPS NAVTSPDQQQ QDDEKNIRRR VYDALNVLMA MDIISKDKKE  300
IQWKGLPRTS LNDIEELKTE RMGLRNRIEK KAAYLQELEE QDALNHVDQC LHTLTSYLFY  360
QYVGLQNLIQ RNEELYHTGD APSGGVALPF ILVQASFLLK TRPHATVEVE ISEDMQLVHF  420
DFNSTPFELH DDNYVLKAMN FCNRQQSDDA TQNLTVDGGE GCSMSGVYQP QIPLASMNTP  480
VRAPPMSPPR PGILKSRVKH EHHGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-37215310193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1919RRRAQKAEKKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013450.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351833.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-145DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A498KT320.0A0A498KT32_MALDO; Uncharacterized protein
STRINGXP_009351833.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-137Transcription factor DP