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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 24852.1 Da PI: 7.3116 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89 | 6e-28 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C ++p++ ++q++++ +++k++G++ +l+l++a ++ r+++++sl+yeA+ r+ +P yG+vg+++++ ++ +q++++ Pbr013296.1 4 SCNGCRVLRKGCSDECEIRPCIewiksSESQANATLFLAKFYGRAGLLNLINAGSPALRPAIFKSLLYEACGRIVNPTYGSVGLMWSGGWDQCQAAVD 101 6*********************9999778899****************************************************************99 PP DUF260 94 lallke 99 ++l ++ Pbr013296.1 102 AVLEGS 107 987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.491 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.8E-22 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDECE IRPCIEWIKS SESQANATLF LAKFYGRAGL LNLINAGSPA 60 LRPAIFKSLL YEACGRIVNP TYGSVGLMWS GGWDQCQAAV DAVLEGSPIM GIDADVLKRN 120 TNPNLDPPHK SGDIRHVSRD TTSGSSSHNK ATTRNKLKRS MNRPKIQPDF ATGSNTKSLA 180 QLCNVPDPDD LYPIPQGNGS SGDQQAADDQ DGEIGLELTL GLGLPPLTHL N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356758.1 | 1e-172 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 2e-69 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A498HJT5 | 1e-150 | A0A498HJT5_MALDO; Uncharacterized protein | ||||
STRING | XP_009356758.1 | 1e-171 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-71 | LOB domain-containing protein 42 |