PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr013108.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 390aa MW: 43798 Da PI: 4.527

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr013108.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	60.5	5.7e-19	8	144	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdi..ykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr.atksgyWk...at 86 p GfrF+Ptd+elv ++L + +e+ + +l ++ i+ ++i +k+eP+++ + +++ ++ +yfF++ ++ +++g++ r + + g+W at Pbr013108.1 8 PFGFRFKPTDQELVGHFLYNFLENIPlAPLYNTlIHGCNIfgNKSEPSEIWEayggtQLADDQPALYFFTELKRLNPKGTNIDRkMGRGGTWTgkaAT 105 89********************99744444459944588*7435554444455588***************6677999733344 PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + + +++ + +++glk+t+ + ++ + + +W+++ey+ Pbr013108.1 106 VRVEGIVDGRPTDIGLKRTFRYKNE--GSEDHKRWLLDEYS 144 4455555558888******9843..3335789****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-21	6	170	IPR003441	NAC domain
PROSITE profile	PS51005	22.945	7	170	IPR003441	NAC domain
Pfam	PF02365	1.3E-14	8	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MENNSLVPFG FRFKPTDQEL VGHFLYNFLE NIPLAPLYNT LIHGCNIFGN KSEPSEIWEA 60 YGGTQLADDQ PALYFFTELK RLNPKGTNID RKMGRGGTWT GKAATVRVEG IVDGRPTDIG 120 LKRTFRYKNE GSEDHKRWLL DEYSHFAGPR NNKSNFSYDF NVALCRLRKK EGSRINKRMC 180 STSSLSKDQL PNSKKQRSTN KKMKKEDDQV VSKGSSSQNI NVINLAEEEA PQGSSCLSSE 240 IVAVREINKF TDADDVVYDH DLLDETLTVD ELLPVLEASG IVSGEAVEEQ ALNPIMLEEY 300 TPETQKLPLP AAAVVAADGA VGQKAWDPSL LDEYWLAETQ QEPFPTMTGM FPYLEEACNP 360 SSFENVVDQS LFDINYWNNS FMDDQFMPP*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MENNSLVPFG FRFKPTDQEL VGHFLYNFLE NIPLAPLYNT LIHGCNIFGN KSEPSEIWEA  60
YGGTQLADDQ PALYFFTELK RLNPKGTNID RKMGRGGTWT GKAATVRVEG IVDGRPTDIG  120
LKRTFRYKNE GSEDHKRWLL DEYSHFAGPR NNKSNFSYDF NVALCRLRKK EGSRINKRMC  180
STSSLSKDQL PNSKKQRSTN KKMKKEDDQV VSKGSSSQNI NVINLAEEEA PQGSSCLSSE  240
IVAVREINKF TDADDVVYDH DLLDETLTVD ELLPVLEASG IVSGEAVEEQ ALNPIMLEEY  300
TPETQKLPLP AAAVVAADGA VGQKAWDPSL LDEYWLAETQ QEPFPTMTGM FPYLEEACNP  360
SSFENVVDQS LFDINYWNNS FMDDQFMPP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr013108.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028956332.1	0.0	uncharacterized protein LOC114824097
TrEMBL	A0A498KEC1	0.0	A0A498KEC1_MALDO; Uncharacterized protein
STRING	XP_009358388.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15308	2	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32510.1	6e-10	NAC domain containing protein 11