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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 23985.3 Da PI: 9.2522 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 132.2 | 2.1e-41 | 31 | 131 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r+d ++slvyeA+ r+rdPvyG++gvi++lqqq+++l+ael++++ Pbr013074.1 31 PCAACKLLRRRCAEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLLEVAENQRPDPANSLVYEANLRLRDPVYGCMGVISALQQQIQSLQAELNAVR 128 7***********************************************************************************************99 PP DUF260 99 eel 101 +++ Pbr013074.1 129 TQI 131 885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.435 | 30 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.4E-41 | 31 | 128 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGTTRISSSS FGVPHQGMTM MSTTTLNTIT PCAACKLLRR RCAEECPFSP YFSPHEPQKF 60 SAVHKVFGAS NVSKMLLEVA ENQRPDPANS LVYEANLRLR DPVYGCMGVI SALQQQIQSL 120 QAELNAVRTQ ILRHKFKEAT SPSIVSTRGI IHHAALVSNS GMVSIAAQPQ AISPPPPLPL 180 PPVAAPSSVV FSSSSSSSAS SLYNPSTNTT GYSSISSKNV PYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-43 | 24 | 138 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-43 | 24 | 138 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013074.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354353.1 | 1e-163 | PREDICTED: LOB domain-containing protein 15-like | ||||
Swissprot | Q9AT61 | 8e-72 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A498KEF5 | 1e-125 | A0A498KEF5_MALDO; Uncharacterized protein | ||||
STRING | XP_009354353.1 | 1e-163 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30340.1 | 9e-59 | LOB domain-containing protein 13 |
Publications ? help Back to Top | |||
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