 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pbr012908.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
| Family |
HSF |
| Protein Properties |
Length: 357aa MW: 40481.9 Da PI: 5.0041 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pbr012908.1 | genome | CPETR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 111.4 | 6.1e-35 | 47 | 138 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl+k+y++++d+ + ++sws+ g sfvv+d+++f ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++ik
Pbr012908.1 47 FLNKTYDMVDDSGSNGVVSWSRGGASFVVWDPHTFVMSLLPKYFKHNNFSSFVRQLNTYGFRKVDPNR---------WEFANEGFVRGQKHLLKNIK 134
9***************************************************************9998.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+k
Pbr012908.1 135 RRKA 138
*986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MNYLYPVKEE YPGSSSSQPG PGFDQMVMTI PPPQPMEGLN DMGPPPFLNK TYDMVDDSGS 60
NGVVSWSRGG ASFVVWDPHT FVMSLLPKYF KHNNFSSFVR QLNTYGFRKV DPNRWEFANE 120
GFVRGQKHLL KNIKRRKAPS QPFPAQQAVG PCMELGHFGI DGEVDRLRHD KQVLMMELVK 180
LRQQQQSTRA YLQAMEQRLQ GTELKQQQMM SFLARAMQNP AFIQQLVQQK EKKKELEEAM 240
TKKRRRPIDQ GLSGVGGGES NQVKREPPEF GDCEYEMSEL EALAMEMQGL GKVGKEQKEV 300
VEPLDSGDKE LDEGFWEELL SERFEGDSTI PSADVGEDED VIILADRLGY FGSWPK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 7e-23 | 45 | 136 | 18 | 120 | Heat shock factor protein 1 |
| 5hdg_A | 6e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
| 5hdn_A | 6e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
| 5hdn_B | 6e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
| 5hdn_C | 6e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
| 5hdn_D | 6e-23 | 45 | 136 | 8 | 110 | Heat shock factor protein 1 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 129 | 135 | LKNIKRR |
| 2 | 231 | 245 | KKKELEEAMTKKRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB627237 | 2e-75 | AB627237.1 Malus x domestica mRNA, microsatellite: MEST080, clone: FRT01_22_F12. |
