PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012883.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 306aa    MW: 35353.3 Da    PI: 6.5656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012883.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.99.6e-2471441128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpk.........kvka..eekewyfFskrdkkyatgkrknra..tksgyWk 84 
                  +p+G+rF P+d+el+ +yL+++++g++ +   +++++d+y + eP+d+ +         +  +   +k++y F++ ++k+++g+r  r+  t+ g+Wk
  Pbr012883.1   7 VPVGYRFMPRDDELLLDYLRPRLDGQDYPK-GIVHDCDLYGLeEPSDIWRrlnrashegH--EctVDKDIYVFTTLNSKAPNGSRFCRTvgTTGGTWK 101
                  599************************999.89*******9978****643555544431..02245688******************645779**** PP

          NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k+++++  ++++g +k +++ ++ +  +++ +W+mhe++l
  Pbr012883.1 102 GEDAGKKIYASgIKHAIGFRKRFTYRNKGS--PQNDHWIMHEFHL 144
                  *********9855677*********95444..459*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-293167IPR003441NAC domain
PROSITE profilePS5100529.2117167IPR003441NAC domain
PfamPF023655.1E-168144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAGYYHVPVG YRFMPRDDEL LLDYLRPRLD GQDYPKGIVH DCDLYGLEEP SDIWRRLNRA  60
SHEGHECTVD KDIYVFTTLN SKAPNGSRFC RTVGTTGGTW KGEDAGKKIY ASGIKHAIGF  120
RKRFTYRNKG SPQNDHWIMH EFHLDPSLLR NKHHQEKNIV LCILKRKDDI SKKRKLEERD  180
NYEENAANHF QPLALNAINV GDYNNAPIYM EQIAFDHSQP LALTATTIRD YSIDPRYPEE  240
NAANQFQPQD LYAATTGDYS NAHWYTKQNA ADHFEPHDEE RNATNEDLTT VLRRMEEILM  300
SGFRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-15717317171NO APICAL MERISTEM PROTEIN
1ut4_B1e-15717317171NO APICAL MERISTEM PROTEIN
1ut7_A1e-15717317171NO APICAL MERISTEM PROTEIN
1ut7_B1e-15717317171NO APICAL MERISTEM PROTEIN
3swm_A1e-15717320174NAC domain-containing protein 19
3swm_B1e-15717320174NAC domain-containing protein 19
3swm_C1e-15717320174NAC domain-containing protein 19
3swm_D1e-15717320174NAC domain-containing protein 19
3swp_A1e-15717320174NAC domain-containing protein 19
3swp_B1e-15717320174NAC domain-containing protein 19
3swp_C1e-15717320174NAC domain-containing protein 19
3swp_D1e-15717320174NAC domain-containing protein 19
4dul_A1e-15717317171NAC domain-containing protein 19
4dul_B1e-15717317171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012883.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370823.10.0PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A498KBK10.0A0A498KBK1_MALDO; Uncharacterized protein
STRINGXP_009370823.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.15e-19Arabidopsis NAC domain containing protein 26