PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr012639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | NAC | ||||||||
Protein Properties | Length: 696aa MW: 79128.6 Da PI: 5.8064 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 181.5 | 2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv +yLk+k++g+k+el evi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s + Pbr012639.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS-Q 101 79****************************.99***************6434555777**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 +++vg+kktLv+y+grap+g +tdWvmheyrl Pbr012639.1 102 TRAVGMKKTLVYYRGRAPHGIRTDWVMHEYRL 133 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-64 | 4 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.691 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 696 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GIRTDWVMHE YRLDERECET AQGLQVQDAY ALCRIFKKTA TGPKIGEHYG STSTTSYQLT 180 SDHSSSVNEL YSDGGRCEDF ESSSYPMQMN NACSSSPNFV HTNSLDDMGR KRDGKWTQFL 240 SKDAFNCSSS FSHISTHGNI PYPPSKVDIA LECARLQHRL SLPPLEVEDF SQVGLTDFKT 300 MQYSNPAPDT TNTETDALQE ILSVAHVSQE MINQSSNLVD QTWGGNYAPP ANDFSFMVDR 360 DAQYNQITGH MNSMRYVDDK TWGNSYTRSI EIGDLEDDFR MDNTAENLRW IGMSDKDLEK 420 SFTEEHKIVP IENISSFRRE EQEQQYEIQG ETGHHSGLIK ELNDNEANDD DFSLSFINED 480 PNENFLHDGN MDDYSPSPSF EVIEEIQVNH GMFVSTRQVA ETFFHQLMPS QTVKVHLNPV 540 FGQNFFVERV VAQKKSEDRG SLFERSKELV MEKFDGIAKS TRPWRKIAST LVCAVTLILM 600 HMIFSLGQHM EDEKLMDAFT RTTTATSVEE NGNSEISNKK KGLGLIKWSN KKEKVCLVNI 660 RGGNSCSVFL KKMGIFLTVS LALGTMWANH NIISP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-56 | 2 | 158 | 11 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr012639.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018506050.1 | 0.0 | PREDICTED: NAC domain-containing protein 86 | ||||
TrEMBL | A0A498HAI9 | 0.0 | A0A498HAI9_MALDO; Uncharacterized protein | ||||
STRING | XP_009370573.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4421 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-165 | NAC domain containing protein 28 |