PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012635.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 513aa MW: 56468.7 Da PI: 5.885

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012635.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	90	134	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I ++ ++t+ q++s+ qk+ Pbr012635.1 90 RERWTEEEHKKFLEALKLYGRA-WRKIEDHVV-TKTAVQIRSHAQKF 134 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.19E-16	84	138	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.008	85	139	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.2E-17	88	137	IPR006447	Myb domain, plants
SMART	SM00717	1.1E-12	89	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-9	90	130	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-13	90	133	IPR001005	SANT/Myb domain
CDD	cd00167	7.59E-10	92	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSIFLVYECG EDKDKVLLWF LQAQGVRRNG VVSRRVEEED EFGTGSDGVV SASNGILVSA 60 GGVQLKDDQF SSGNDFTPKV RKPYTITKQR ERWTEEEHKK FLEALKLYGR AWRKIEDHVV 120 TKTAVQIRSH AQKFFSKVAR DPNGGNTASE EPIDIPPPRP KRKPMRPYPR KLVHPLNKET 180 STVEQSAMST SPNLSVLEQE NQSPKSVLSV IGSDAMGSTD SSTPSDGLSP DSSAAGVNSG 240 NLIPSEPNPS LEESGSTINN CSLPNKQLKM KLELFPTDDV DASGGSAEEA SARTLKLFGR 300 TVLVTDSHRP SSRAAGDSKS LPSDVQEEKP VQTSLPCNHT DMESASGSVE HVWDNFPYGR 360 HQGIYFMQFQ NQNSNVVESG TNAYPVPWWN ICPPFIPFHM QQQPVNEDVD SKKVEREGSC 420 TGSDAGTASD DEICDKEVET QGDRHVSDKE REPNSVLQFK VSANSAFSVL RASTGQYRKG 480 FVPYKRCVAE RDAKSSTMAS EDRDGKRVRL SF*

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSIFLVYECG EDKDKVLLWF LQAQGVRRNG VVSRRVEEED EFGTGSDGVV SASNGILVSA  60
GGVQLKDDQF SSGNDFTPKV RKPYTITKQR ERWTEEEHKK FLEALKLYGR AWRKIEDHVV  120
TKTAVQIRSH AQKFFSKVAR DPNGGNTASE EPIDIPPPRP KRKPMRPYPR KLVHPLNKET  180
STVEQSAMST SPNLSVLEQE NQSPKSVLSV IGSDAMGSTD SSTPSDGLSP DSSAAGVNSG  240
NLIPSEPNPS LEESGSTINN CSLPNKQLKM KLELFPTDDV DASGGSAEEA SARTLKLFGR  300
TVLVTDSHRP SSRAAGDSKS LPSDVQEEKP VQTSLPCNHT DMESASGSVE HVWDNFPYGR  360
HQGIYFMQFQ NQNSNVVESG TNAYPVPWWN ICPPFIPFHM QQQPVNEDVD SKKVEREGSC  420
TGSDAGTASD DEICDKEVET QGDRHVSDKE REPNSVLQFK VSANSAFSVL RASTGQYRKG  480
FVPYKRCVAE RDAKSSTMAS EDRDGKRVRL SF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012635.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009370571.1	0.0	PREDICTED: protein REVEILLE 1
TrEMBL	A0A498HHS8	0.0	A0A498HHS8_MALDO; Uncharacterized protein
STRING	XP_009370571.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-62	MYB_related family protein