PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012632.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HD-ZIP
Protein Properties Length: 677aa    MW: 74728.8 Da    PI: 6.5085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012632.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.8e-192576354
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54
                 +  ++t+eq+++Lee+F+ +++p+ ++r++L+++lgL+ rq+k+WFqN+R++
  Pbr012632.1 25 NYYRHTTEQIQRLEEFFKCCSHPDDNQRQQLSRELGLEPRQIKFWFQNKRTQ 76
                 56689*********************************************87 PP
2START79.39.6e-2629741093206
                  EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHH CS
        START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvks 187
                   m+ ++  lsplv+ Rdf+f+Ry++q ++g+wvivdvS + ++  ++ +s + R   lpSg++i++ s g s+vtw+ehv ++ ++  h l+r lv +
  Pbr012632.1 297 SMYEQMHILSPLVApRDFYFLRYCQQIERGTWVIVDVSHNFPKGSSSnQSLSWR---LPSGCMIKDISCGCSRVTWIEHVAVDNKTHaHRLYRDLVCR 391
                  58899999****999****************************99875666666...**************************99888********** PP

                  HHHHHHHHHHHHTXXXXXX CS
        START 188 glaegaktwvatlqrqcek 206
                   +a ga +w  tl+r ce+
  Pbr012632.1 392 NVAYGAERWIVTLKRMCER 410
                  *****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.4E-20774IPR009057Homeodomain-like
SuperFamilySSF466891.75E-171178IPR009057Homeodomain-like
PROSITE profilePS5007116.2122080IPR001356Homeobox domain
SMARTSM003894.5E-162284IPR001356Homeobox domain
CDDcd000867.81E-172476No hitNo description
PfamPF000461.5E-162676IPR001356Homeobox domain
PROSITE profilePS5084826.417212413IPR002913START domain
CDDcd088752.56E-78216409No hitNo description
SuperFamilySSF559613.98E-23216411No hitNo description
SMARTSM002345.5E-11221410IPR002913START domain
PfamPF018521.2E-20298410IPR002913START domain
Gene3DG3DSA:3.30.530.209.9E-6300373IPR023393START-like domain
SuperFamilySSF559618.38E-14472664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MELQGNGGAS GDGREASNSR RGNKNYYRHT TEQIQRLEEF FKCCSHPDDN QRQQLSRELG  60
LEPRQIKFWF QNKRTQTQAQ NESADNTVLR KDNERIQWEN YAIIKALKSV LCPTCGGPPF  120
GEEARQLSLQ RLQLENAYLK EEASIWNHDK VASLLSEYIG KPPSQIESLA SVVGSTLDLS  180
LGYSTNQGII GSPPLNLNLT SPALAYQIKE IPEREKTLIA DIAASAMEEL VSLFQIGEPL  240
WVKSTADGRY FLNGDNYDKL FPKANQFKTS GVCVESSKDS GVVAINAATL VDMFLDSMYE  300
QMHILSPLVA PRDFYFLRYC QQIERGTWVI VDVSHNFPKG SSSNQSLSWR LPSGCMIKDI  360
SCGCSRVTWI EHVAVDNKTH AHRLYRDLVC RNVAYGAERW IVTLKRMCER LDCLMVEVDS  420
TCEFGGGKSS IVPSVTSSEG KRSVMMLSQR MVKNFCGMLS MAGKLDFPQS SEVNNSGVRV  480
SVRKSTEPGQ PHGMIVSIAT SLWLPLPSQT IFSFFRDERN RVQWDVLSNG NPVHEIANIP  540
TGTHPGNCIS VIRPFTPTEN NMLMLQESYT DPLGSIFVYA PVDMPALNVA VSGEDSSNIP  600
ILPSGFVISG DGRAETTGDS GHSRAGGSLL TVAFQILVST PSTSKQMNME SVAIVNALIS  660
STVQKIKVAL NCSSLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012632.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370612.10.0PREDICTED: homeobox-leucine zipper protein ROC8-like
TrEMBLA0A498HGL50.0A0A498HGL5_MALDO; Uncharacterized protein
STRINGXP_009370612.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11