PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012547.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 1063aa MW: 120217 Da PI: 6.1831

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012547.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	90	4e-28	55	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 lp G++F+P+d el+ +L++k+ + + +e i++++ i++ +P++Lp + +++ ++++fF+k+ ++yatg+rk+r+ ++ Pbr012547.2 55 LPIGVKFDPSDGELL-VHLAAKCGVGNsqphllI--DELIPTLEgdngICYDHPKNLPGA-TKDGSSIHFFHKTMNAYATGQRKRRKvdsqrsvaSED 148 699**********.678888765554566432..334544423345******44.4567899**************868888777669 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k++l+ + ++g kk++v+y +++ k+ek +Wvmh+y+l Pbr012547.2 149 VRWHKTGKTKAILE--NGVKGWKKIMVLYksSKKGTKPEKVNWVMHQYHL 196 99*******9..6689*****4434666778*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-32	40	215	IPR003441	NAC domain
PROSITE profile	PS51005	29.823	55	215	IPR003441	NAC domain
Pfam	PF02365	3.6E-12	56	196	IPR003441	NAC domain
PROSITE profile	PS51295	13.892	572	671	IPR001890	RNA-binding, CRM domain
SMART	SM01103	2.8E-9	574	649	IPR001890	RNA-binding, CRM domain
SuperFamily	SSF75471	4.71E-14	574	647	IPR001890	RNA-binding, CRM domain
Gene3D	G3DSA:3.30.110.60	5.1E-10	575	646	IPR001890	RNA-binding, CRM domain
Pfam	PF01985	1.8E-13	576	645	IPR001890	RNA-binding, CRM domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003723	Molecular Function	RNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1063 aa Download sequence Send to blast
MARAWLINSR GLASKVKNAA RSTACPIKEC GANRECPNCH FVIDNSDVIS EWPGLPIGVK 60 FDPSDGELLV HLAAKCGVGN SQPHLLIDEL IPTLEGDNGI CYDHPKNLPG ATKDGSSIHF 120 FHKTMNAYAT GQRKRRKVDS QRSVASEDVR WHKTGKTKAI LENGVKGWKK IMVLYKSSKK 180 GTKPEKVNWV MHQYHLGAEE DEREGDYVVS KIFYQQHKQS ERNDNNVVAE DSDVNALRTS 240 PRTPVSNPPI PPRPGKSVWF EDVPDEAMLR SSVKEPELAQ EAYHVPQPDP RFEDNIGEPT 300 WLAGESQADD LHSLDETLLC KEIFGSASNL ISNTDFNSNT YEVNGNSSTP CGLRDLENIG 360 LDSPPDFQLP AQMLKPNPKP KTLKNLSAIE VGREEGNEQS KALDSRLRPV AVRLKPEPAI 420 NVRCEEAQQP QLHVRLFSPP IQSLQVLSLN ALLRDVSAKV LSSNVVQPSK PSDDCLSSSS 480 RLANPFDGWS RSMSTSRGSS SMRSKVAKRM QKESGKTLRE VRRAKKLQKK LMTENERLIY 540 NLKRAKRKVA LLLQKLKKYE LPDLPAPRHD PELVTVEQLQ ALKKIGFKNK NYVPVGVRGV 600 FGGVVQNMHL HWKFHETVQV CCDNFPKEKI KEMASMIARL SGGIVALFKA RFEQALESQK 660 LNIKKIEQQL RRSGINPEDP VAIASIQRVA SSFFNAIDQK DGSPYVFHGD KPSVAEPDNK 720 FKHPEPPDEE EEEELDKFIA EIEDAAEREW AAEEAAEKEE FTRMRYWNRE EYGGRYRRSE 780 EPENDDSDDE IPRVRDWRQT HGKQRPNGDY EDDNEEWRSN NVVGSSVLDS DADDSDGTPE 840 KFKISPRDWG RQNKIGRAKN DECFYRNSEA NNRKASNRKI MVDVESENVL SDLDTAMWKF 900 NSEEEHDSTA SRAANYDFRS SSDEEEDLTY TKGGKEWVND SESNSGYSNK ARGKFEASRV 960 AEGKHDRRIG RCNSEYFKRN ADVSTRRKPV EEDVKSKDIS GDSENEIWES NAASDSGAST 1020 TGRIDYNSSD EEDYQVRREE KKGNRNKSTR TRKDLDEDWD SD*

Sequence ? help Back to Top

Protein Sequence Length: 1063 aa Download sequence Send to blast

MARAWLINSR GLASKVKNAA RSTACPIKEC GANRECPNCH FVIDNSDVIS EWPGLPIGVK  60
FDPSDGELLV HLAAKCGVGN SQPHLLIDEL IPTLEGDNGI CYDHPKNLPG ATKDGSSIHF  120
FHKTMNAYAT GQRKRRKVDS QRSVASEDVR WHKTGKTKAI LENGVKGWKK IMVLYKSSKK  180
GTKPEKVNWV MHQYHLGAEE DEREGDYVVS KIFYQQHKQS ERNDNNVVAE DSDVNALRTS  240
PRTPVSNPPI PPRPGKSVWF EDVPDEAMLR SSVKEPELAQ EAYHVPQPDP RFEDNIGEPT  300
WLAGESQADD LHSLDETLLC KEIFGSASNL ISNTDFNSNT YEVNGNSSTP CGLRDLENIG  360
LDSPPDFQLP AQMLKPNPKP KTLKNLSAIE VGREEGNEQS KALDSRLRPV AVRLKPEPAI  420
NVRCEEAQQP QLHVRLFSPP IQSLQVLSLN ALLRDVSAKV LSSNVVQPSK PSDDCLSSSS  480
RLANPFDGWS RSMSTSRGSS SMRSKVAKRM QKESGKTLRE VRRAKKLQKK LMTENERLIY  540
NLKRAKRKVA LLLQKLKKYE LPDLPAPRHD PELVTVEQLQ ALKKIGFKNK NYVPVGVRGV  600
FGGVVQNMHL HWKFHETVQV CCDNFPKEKI KEMASMIARL SGGIVALFKA RFEQALESQK  660
LNIKKIEQQL RRSGINPEDP VAIASIQRVA SSFFNAIDQK DGSPYVFHGD KPSVAEPDNK  720
FKHPEPPDEE EEEELDKFIA EIEDAAEREW AAEEAAEKEE FTRMRYWNRE EYGGRYRRSE  780
EPENDDSDDE IPRVRDWRQT HGKQRPNGDY EDDNEEWRSN NVVGSSVLDS DADDSDGTPE  840
KFKISPRDWG RQNKIGRAKN DECFYRNSEA NNRKASNRKI MVDVESENVL SDLDTAMWKF  900
NSEEEHDSTA SRAANYDFRS SSDEEEDLTY TKGGKEWVND SESNSGYSNK ARGKFEASRV  960
AEGKHDRRIG RCNSEYFKRN ADVSTRRKPV EEDVKSKDIS GDSENEIWES NAASDSGAST  1020
TGRIDYNSSD EEDYQVRREE KKGNRNKSTR TRKDLDEDWD SD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012547.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341379.2	0.0	LOW QUALITY PROTEIN: uncharacterized CRM domain-containing protein At3g25440, chloroplastic
TrEMBL	A0A498J2E4	0.0	A0A498J2E4_MALDO; Uncharacterized protein
STRING	VIT_14s0066g00360.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9824	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	5e-89	NAC domain containing protein 44