PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012502.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 324aa    MW: 36905.6 Da    PI: 5.5322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012502.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-15105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+ E+   ++++  lG++ W++Ia++++ gRt++++k++w++
      Pbr012502.1 105 RGAFTEAEENEMIQLHSCLGNR-WSKIASHFP-GRTDNEIKNHWNT 148
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-18544IPR009057Homeodomain-like
SuperFamilySSF466891.79E-6845IPR009057Homeodomain-like
PROSITE profilePS500907.863999IPR017877Myb-like domain
SMARTSM007173.613101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-1882102IPR009057Homeodomain-like
SuperFamilySSF466896.53E-2186158IPR009057Homeodomain-like
PROSITE profilePS5129424.656100154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-24103155IPR009057Homeodomain-like
SMARTSM007172.0E-13104152IPR001005SANT/Myb domain
PfamPF002499.1E-14105148IPR001005SANT/Myb domain
CDDcd001671.17E-9107148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGIYILL FNLHFDHDLV  60
DFHSLHPLLR LDPHQIILYG ELGLLRCGKS CRLRWINYLR PDLKRGAFTE AEENEMIQLH  120
SCLGNRWSKI ASHFPGRTDN EIKNHWNTRI KKTLKHLGLD PLTHKPIEEK ESTEENKETI  180
TQHSNITSSS SEEGPHKSQS NGLEAKLLQD SYGNEGFPES DEKLQNEVQL APLGDTNDIL  240
KNYEVFCGSL DLGTMMLNQG ITNTSSMSNS YSTSSFSVED SNNASISMGE SMQENCLQQW  300
VDTVDSMLSW DGFNNLEKDL FFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-22121545108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012502.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370316.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A498HI610.0A0A498HI61_MALDO; Uncharacterized protein
STRINGXP_009370316.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-76myb domain protein 40