PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012440.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 679aa    MW: 75024.6 Da    PI: 4.5989
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012440.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.7e-08521563346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rW++++ el+++a++q G++ ++ I +    gRt+ q+k+++ k
      Pbr012440.2 521 RWSKQDTELFYEAIQQCGSD-FTMIQELYFPGRTRHQVKLKFKK 563
                      9*******************.*****98766**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.4E-26512600No hitNo description
PROSITE profilePS512939.274517566IPR017884SANT domain
SMARTSM007172.7E-6518567IPR001005SANT/Myb domain
SuperFamilySSF466892.39E-10521569IPR009057Homeodomain-like
CDDcd001675.92E-6521563No hitNo description
Gene3DG3DSA:1.10.10.601.4E-5521563IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSDWDDVFLA PAGVPEIPVT LSTTISDSVP SVDVGDSKLT DQVGSIESSE NNVIPLSDGK  60
KDTGSCESTA DVAGSDGKAS GENADIFSGL ECLDDSISQT TRGTAEIAVN KSGDKADTGT  120
KPEAETCSDY CTTQDPMSCR EVSISNKQGE MQLEPEVDGA FSDFEVLDVG SDVAISSERH  180
AGKHQPKLKV KKGKENIHIP CSEVEPNMGL QAGHLVHFET CDMNDSSLPA FPTGHVIDHP  240
SPRLGDSSTL NPTSDSQVNT ENLAETNHSD GAILGDAVHS EDVGGTPEKV GRKSRNRNTS  300
TTSDLPQKRK SSATEKAEGE TSSRQLRKRV PHKQVDELAD EANDDSFTAD PSSDSKINED  360
EDNIDEYREH KTSQRKSAPR KSKKPVSGKE PVQKHKKTKE ASDQSTKDAS KKFSHSTRRN  420
RRQVDKSLLE IPEEEFDPYK LSLKDLIRLA EHKELLKIKE ARKLTTQQPN ESTNSDSHKE  480
GSHNEEFYPS EHGTDENQAT YHVNSSLLNY QTYMDKAPTA RWSKQDTELF YEAIQQCGSD  540
FTMIQELYFP GRTRHQVKLK FKKEERQHPL RISEAILSRS THSTDHSQFT SYIEKLQQAA  600
QANKESNADE SVDLTGKKEG LREQTRDTDE GMEKLESEEV QDQEADVAEV QDQEAVAAEV  660
SNPLKSDEID EEDFTWSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012440.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364966.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_008364967.10.0transcription factor TFIIIB component B'' homolog isoform X1
RefseqXP_008364968.10.0transcription factor TFIIIB component B'' homolog isoform X1
TrEMBLA0A498IZ320.0A0A498IZ32_MALDO; Uncharacterized protein
STRINGXP_008364966.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.15e-45MYB_related family protein