PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr012192.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 608aa MW: 64730.1 Da PI: 9.2322

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr012192.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Pbr012192.1 78 FICEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	13.1	0.00029	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Pbr012192.1 154 WKCEKCSKRYAVQSDWKAHSKTC 176 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.8E-6	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.19E-7	77	100	No hit	No description
Pfam	PF12171	3.0E-5	78	100	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	78	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-5	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.19E-7	149	174	No hit	No description
SMART	SM00355	130	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MAASSSSGAP LFGIREEDQN QQMNKQQHSS ATPTSSTAAP AAPTQKKRRN QPGTPSKTDP 60 EAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKT TKEPKRKVYL 120 CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAQESA RHPPSLSTIG SSLYGGGSLS NTGLGLSHQV 240 VGPPHQLSSL DHNNQSSLLR LGGSSGADAA ARTGQFDHLL SSPSMGSSFR SAQSSAASFF 300 MTGASDHDQS NQQQYHDQDK SFHGLMQFQS PHQHHSGGGA NIFNLPFLSN STTNNTNSYS 360 ANNNNLLISP DHFNTNPNGS TTGGGSDVSN NLFTGHIMGG GNNMSSGVPS LYSNNGNSQQ 420 QAMSSHMSAT ALLQKAAQMG STTSNNTTTA SLLRSFGSSS STTTKPDRLG TLVPSSLGGM 480 FGSDQTDQSH LQDLMDSFAS GGGGSSIFGN AAFGGYDASA NRAINMEDTK LQQQNLGLRN 540 IGGGSDRLTR DFLGVGQVVR SMSGGFSHQK SEQQHGGMEM MSSLDSESNA AAAAPSTQSF 600 GGGGNFQ*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MAASSSSGAP LFGIREEDQN QQMNKQQHSS ATPTSSTAAP AAPTQKKRRN QPGTPSKTDP  60
EAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKT TKEPKRKVYL  120
CPEPTCVHHD PSRALGDLTG IKKHYSRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAQESA RHPPSLSTIG SSLYGGGSLS NTGLGLSHQV  240
VGPPHQLSSL DHNNQSSLLR LGGSSGADAA ARTGQFDHLL SSPSMGSSFR SAQSSAASFF  300
MTGASDHDQS NQQQYHDQDK SFHGLMQFQS PHQHHSGGGA NIFNLPFLSN STTNNTNSYS  360
ANNNNLLISP DHFNTNPNGS TTGGGSDVSN NLFTGHIMGG GNNMSSGVPS LYSNNGNSQQ  420
QAMSSHMSAT ALLQKAAQMG STTSNNTTTA SLLRSFGSSS STTTKPDRLG TLVPSSLGGM  480
FGSDQTDQSH LQDLMDSFAS GGGGSSIFGN AAFGGYDASA NRAINMEDTK LQQQNLGLRN  540
IGGGSDRLTR DFLGVGQVVR SMSGGFSHQK SEQQHGGMEM MSSLDSESNA AAAAPSTQSF  600
GGGGNFQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	150	211	3	64	Zinc finger protein JACKDAW
5b3h_F	2e-35	150	211	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr012192.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009351632.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic
Refseq	XP_009351633.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZUL3	1e-140	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A498HJB5	0.0	A0A498HJB5_MALDO; Uncharacterized protein
STRING	XP_009351632.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1536	33	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-112	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]