PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012054.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family AP2
Protein Properties Length: 554aa    MW: 61075.9 Da    PI: 8.8751
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012054.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-11172228155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Pbr012054.1 172 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 228
                  57*******************5444.2455536655.779999**************98 PP
2AP245.91.4e-14271322155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pbr012054.1 271 SIYRGVTRYHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 322
                  57****99999*******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-9172228IPR001471AP2/ERF domain
CDDcd000187.85E-19172238No hitNo description
SuperFamilySSF541716.47E-15172237IPR016177DNA-binding domain
PROSITE profilePS5103217.477173236IPR001471AP2/ERF domain
SMARTSM003804.8E-23173242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-12173237IPR001471AP2/ERF domain
PRINTSPR003672.4E-6174185IPR001471AP2/ERF domain
PfamPF008477.8E-9271322IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-17271332IPR016177DNA-binding domain
CDDcd000182.36E-23271332No hitNo description
PROSITE profilePS5103218.769272330IPR001471AP2/ERF domain
SMARTSM003801.1E-31272336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17272331IPR001471AP2/ERF domain
PRINTSPR003672.4E-6312332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDSSPQNWLL GFSLSNHSHH HQPSHDLSFS EAFTSNSPTH SAGTVADHHR QGASPTSATD  60
LSIFSSGVNG SKLEDFLGGC TTFTTTVTRT SLPQFSTADH HHQTAPLALS ENRIYDPELK  120
TIAASFLRGF STIATTTTTD TLQATKPKNH HPLTSSYPIP KKPTDTFGQR TSIYRGVTRH  180
RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEEKAARAYD LAALKYWGPT TTTNFPVTNY  240
EKELWEMKNM TRQEFVASLR RKSSGFSRGA SIYRGVTRYH QHGRWQARIG RVAGNKDLYL  300
GTFTTQEEAA EAYDIAAIKF RGLNAVTNFD MSHYDVKSIA NSNLPIGGMS RKSKNSSDSD  360
SKSIEGNRSA DDRDLSFASS VIFASQQPRS STLNFAIPLK QDSASDYWSN IFGNNLSLSN  420
VKNPSTVLDA PTSSLFQSCA NGSYGNNSSP LPFNMDFSST SRTSVSETNN AYYGNFNVDG  480
QQHQQQLQHQ QQEQSTSTGT GTDLIPFATT IALNSNNGYE TSSGYGTWTG PSLHTFHTHA  540
KTNLFQTPIF GME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012054.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370128.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-143AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A498IAV20.0A0A498IAV2_MALDO; Uncharacterized protein
STRINGXP_009370128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-134AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]