PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012053.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 600aa    MW: 65596.7 Da    PI: 7.3171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012053.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14317368155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pbr012053.1 317 SIYRGVTRYHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 368
                  57****99999*******988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.0016202288IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-6255283IPR016177DNA-binding domain
PROSITE profilePS510329.032255282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-7255283IPR001471AP2/ERF domain
CDDcd000186.10E-24317378No hitNo description
PfamPF008478.7E-9317368IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-17317378IPR016177DNA-binding domain
PROSITE profilePS5103218.769318376IPR001471AP2/ERF domain
SMARTSM003801.1E-31318382IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17318377IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MDSSPQNWLL GFSLSNHSHH HQPSHDLSFS EAFTSNSPTH SAGTVADHHR QGASPTSATD  60
LSIFSSGVNG SKLEDFLGGC TTFTTTVTRT SLPQFSTADH HHQTAPLALS ENRIYDPELK  120
TIAASFLRGF STIATTTTTD TLQATKPKNH HPLTSSXXXX XXXXXXLSPL PIPSPKNPLT  180
PSDSAHPFTE ASHGIGGQED MKRICGITVA EEKDKVGRAG KRTVLIIQKD QNNPKKEHSL  240
RLDHLAFDTL GACGYDKEEK AARAYDLAAL KYWGPTTTTN FPVTNYEKEL WEMKNMTRQE  300
FVASLRRKSS GFSRGASIYR GVTRYHQHGR WQARIGRVAG NKDLYLGTFT TQEEAAEAYD  360
IAAIKFRGLN AVTNFDMSHY DVKSIANSNL PIGGMSRKSK NSSDSDSKSI EGNRSADDRD  420
LSFASSVIFA SQQPRSSTLN FAIPLKQDSA SDYWSNIFGN NLSLSNVKNP STVLDAPTSS  480
LFQSCANGSY GNNSSPLPFN MDFSSTSRTS VSETNNAYYG NFNVDGQQHQ QQLQHQQQEQ  540
STSTGTGTDL IPFATTIALN SNNGYETSSG YGTWTGPSLH TFHTHAKTNL FQTPIFGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012053.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370128.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-91AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A498IAV20.0A0A498IAV2_MALDO; Uncharacterized protein
STRINGXP_009370128.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.18e-87AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]