PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr011980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 353aa MW: 38506 Da PI: 7.3694 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+l ++++ +G g+W++ ++ g+ R++k+c++rw +yl Pbr011980.1 14 RGKWTAEEDEILTKYIHAHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.6 | 5.8e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +v++++ lG++ W++Ia++++ gRt++ +k++w+++l Pbr011980.1 67 RGNFTAEEEETIVKLHTALGNR-WSLIAAHLP-GRTDNGIKNYWNSHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.233 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.81E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.503 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MGRAPCCEKL GLKRGKWTAE EDEILTKYIH AHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRAELKRGNF TAEEEETIVK LHTALGNRWS LIAAHLPGRT DNGIKNYWNS HLSRKIYSFI 120 KVGNEHLPSI LNDVKKITSC NKRCKGARAS ISTMNKKSKN KNLAPFNSRK SEANPQLGNP 180 SLPTGTIINL GQVGNEDSNL RGLESWDPIK NGDGEAIGML GTQSSCLHSA EMINFDPCGE 240 QKKSAQLCLG KKENNITSSS TAIYGDNDCE TEVLGTSCEC VDTMDQNNNI VENEERRSTG 300 IWSSSNAAES GGGGGGGELY SFASSMNSGF DDEWLNWGWA GGGLQCHNGE LE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-24 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-24 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr011980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009369961.2 | 0.0 | PREDICTED: myb-related protein P-like | ||||
TrEMBL | A0A498IDK5 | 0.0 | A0A498IDK5_MALDO; Uncharacterized protein | ||||
STRING | XP_009369961.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 7e-75 | myb domain protein 111 |